miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 75322 0.66 0.971529
Target:  5'- gACGGGGGUGGGcaccucGGGcucAAAGGCGGa--- -3'
miRNA:   3'- -UGUCCCCACCC------UCC---UUUCUGUUgugu -5'
33279 3' -53.7 NC_007605.1 + 43604 0.66 0.971529
Target:  5'- -uGGGGGUGGacauGAGGAGGuaauUAGCACGg -3'
miRNA:   3'- ugUCCCCACC----CUCCUUUcu--GUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 96303 0.66 0.968564
Target:  5'- aGCAGGaGG-GGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCaCCcUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 95862 0.66 0.968564
Target:  5'- aGCAGGaGGggcaggagcaGGAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCac--------CCUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 63985 0.66 0.968564
Target:  5'- aACGGGaGGaaacagGaGGAGGAGggGGACAagaGCACAa -3'
miRNA:   3'- -UGUCC-CCa-----C-CCUCCUU--UCUGU---UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 160050 0.66 0.968564
Target:  5'- aACGGGGcaggGGGAGGGu-GGCGGC-CAu -3'
miRNA:   3'- -UGUCCCca--CCCUCCUuuCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 46862 0.66 0.968564
Target:  5'- -gAGGGGuUGGGAGcugccccuGGAgAACACAu -3'
miRNA:   3'- ugUCCCC-ACCCUCcuu-----UCUgUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 96429 0.66 0.968564
Target:  5'- aGCAGGaGG-GGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCaCCcUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 144307 0.66 0.965387
Target:  5'- aGCAGGGGcuuagugugucaUGGuGAGGc-AGGCAAgGCGa -3'
miRNA:   3'- -UGUCCCC------------ACC-CUCCuuUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 41491 0.66 0.965387
Target:  5'- aGCAGGGGcuuagugugucaUGGuGAGGc-AGGCAAgGCGa -3'
miRNA:   3'- -UGUCCCC------------ACC-CUCCuuUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 96486 0.66 0.965387
Target:  5'- gGCAGGaGGggcaggagcaGGAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCac--------CCUCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 109000 0.67 0.954517
Target:  5'- -uGGGGGUGGcaagcccGGGAGAGACugcuCACc -3'
miRNA:   3'- ugUCCCCACCc------UCCUUUCUGuu--GUGu -5'
33279 3' -53.7 NC_007605.1 + 132461 0.67 0.946109
Target:  5'- uCAGGGGcaGGuGAGGAAGauGACGACGg- -3'
miRNA:   3'- uGUCCCCa-CC-CUCCUUU--CUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 90420 0.67 0.946109
Target:  5'- aGCGGacGGUGGGGcucauGGAGGGGCGGCAg- -3'
miRNA:   3'- -UGUCc-CCACCCU-----CCUUUCUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 155333 0.67 0.946109
Target:  5'- gACAGGGGa-GGAGGccGGGCGcuauagGCGCAu -3'
miRNA:   3'- -UGUCCCCacCCUCCuuUCUGU------UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 117779 0.67 0.945664
Target:  5'- cGCAGGGGaggGGGcAGGAuuccccaaugauuGAGGCAAUg-- -3'
miRNA:   3'- -UGUCCCCa--CCC-UCCU-------------UUCUGUUGugu -5'
33279 3' -53.7 NC_007605.1 + 127709 0.67 0.941545
Target:  5'- uAUAGGGGuUGGGGGccAGGAUGAgGCGa -3'
miRNA:   3'- -UGUCCCC-ACCCUCcuUUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 48438 0.67 0.941545
Target:  5'- gGCGGGGGcguagGGGAGGAGcucGugGGgGCc -3'
miRNA:   3'- -UGUCCCCa----CCCUCCUUu--CugUUgUGu -5'
33279 3' -53.7 NC_007605.1 + 36548 0.67 0.941545
Target:  5'- -gGGGGGUGGuGGGAGuGGugGGgGCAc -3'
miRNA:   3'- ugUCCCCACCcUCCUU-UCugUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 133595 0.67 0.941545
Target:  5'- -gGGGGGUccguGGGAGaGAuuGAGACuGCAUAc -3'
miRNA:   3'- ugUCCCCA----CCCUC-CU--UUCUGuUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.