miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33285 5' -56.2 NC_007605.1 + 63828 0.66 0.909051
Target:  5'- cGGCUGCAGGcccaGCcCCCCGaCGAaGCa -3'
miRNA:   3'- -CCGACGUCUaca-CGuGGGGC-GUUcUG- -5'
33285 5' -56.2 NC_007605.1 + 133918 0.66 0.896431
Target:  5'- cGCUGCuGGUGUGaggaGCCCCcuggaguaGCAgguAGGCc -3'
miRNA:   3'- cCGACGuCUACACg---UGGGG--------CGU---UCUG- -5'
33285 5' -56.2 NC_007605.1 + 154831 0.66 0.889772
Target:  5'- cGGUgaUGCGGAccuugGUGUuggCCCGCAAGAa -3'
miRNA:   3'- -CCG--ACGUCUa----CACGug-GGGCGUUCUg -5'
33285 5' -56.2 NC_007605.1 + 168276 0.66 0.889772
Target:  5'- aGCUGcCAGAUGgugGCACCaaguCGCcAGAg -3'
miRNA:   3'- cCGAC-GUCUACa--CGUGGg---GCGuUCUg -5'
33285 5' -56.2 NC_007605.1 + 67256 0.66 0.882887
Target:  5'- uGGCcagGCAGAUGccagGCAUuaggccccggaCCCGCAgcaGGGCu -3'
miRNA:   3'- -CCGa--CGUCUACa---CGUG-----------GGGCGU---UCUG- -5'
33285 5' -56.2 NC_007605.1 + 103314 0.67 0.875778
Target:  5'- -aUUGCGGAggcgGUGCugCCCGuCAguauaucuacAGACg -3'
miRNA:   3'- ccGACGUCUa---CACGugGGGC-GU----------UCUG- -5'
33285 5' -56.2 NC_007605.1 + 38827 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38951 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39076 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39201 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39576 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39326 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38702 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38577 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38452 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 38327 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39451 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 39701 0.67 0.867706
Target:  5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3'
miRNA:   3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5'
33285 5' -56.2 NC_007605.1 + 94855 0.67 0.853163
Target:  5'- uGCUGCAGGcagGggGUugCCCGUGgcAGACa -3'
miRNA:   3'- cCGACGUCUa--Ca-CGugGGGCGU--UCUG- -5'
33285 5' -56.2 NC_007605.1 + 81517 0.67 0.853163
Target:  5'- aGGCUGCGGGgcagGccuuUGCA-CCCGUuAGACc -3'
miRNA:   3'- -CCGACGUCUa---C----ACGUgGGGCGuUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.