miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 171391 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 171300 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 170853 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 170763 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 170331 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 170240 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 169793 0.67 0.969988
Target:  5'- aGGcGGUCgcGCCCCcGGCCGCGccagCCa -3'
miRNA:   3'- -CC-CCGGa-CGGGGuUUGGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 169703 0.72 0.815581
Target:  5'- gGGGGCCgcgggggaaggccacGCCCCcu-CCACuuuUUCCa -3'
miRNA:   3'- -CCCCGGa--------------CGGGGuuuGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 169654 0.73 0.759174
Target:  5'- -cGGCCccccaUGCCCCAgcaAGCCGCAGcgacuUUCCg -3'
miRNA:   3'- ccCCGG-----ACGGGGU---UUGGUGUUu----AAGG- -5'
33288 3' -52.8 NC_007605.1 + 168976 0.67 0.966919
Target:  5'- cGGGGUCUGCCggAGGCaguacgggUACAGAUUUCc -3'
miRNA:   3'- -CCCCGGACGGggUUUG--------GUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 168801 0.66 0.984262
Target:  5'- gGGGGCCgucgcggGCCCgGugGGCCccucuCAAggucguGUUCCa -3'
miRNA:   3'- -CCCCGGa------CGGGgU--UUGGu----GUU------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 166982 0.67 0.960128
Target:  5'- -cGGCCUGCCCgGcucuuCUACGGAgaCCa -3'
miRNA:   3'- ccCCGGACGGGgUuu---GGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 164204 0.7 0.905925
Target:  5'- uGGGGaCCgGCUacgCGGGCCACAGGUgCCu -3'
miRNA:   3'- -CCCC-GGaCGGg--GUUUGGUGUUUAaGG- -5'
33288 3' -52.8 NC_007605.1 + 164106 0.67 0.972848
Target:  5'- aGGaGGCCcGaCCCCA-ACUGCGGGcUCCu -3'
miRNA:   3'- -CC-CCGGaC-GGGGUuUGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 163734 0.74 0.729728
Target:  5'- aGGGCgUGCCCCAGcuCCGCcAGUUUUa -3'
miRNA:   3'- cCCCGgACGGGGUUu-GGUGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 162951 0.66 0.980243
Target:  5'- aGGGCCggGCCCCGGccguguGCCugAAc---- -3'
miRNA:   3'- cCCCGGa-CGGGGUU------UGGugUUuaagg -5'
33288 3' -52.8 NC_007605.1 + 162802 0.66 0.977969
Target:  5'- uGGcGGCC-GCCCCc-GCCACGuagcugCCc -3'
miRNA:   3'- -CC-CCGGaCGGGGuuUGGUGUuuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 162662 0.66 0.977969
Target:  5'- aGGaGCCcgagGCCCCgAGAUCACAuaggggUCCc -3'
miRNA:   3'- cCC-CGGa---CGGGG-UUUGGUGUuua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 161716 0.71 0.848447
Target:  5'- uGGGCCcgggaGCCCCcguCCACAAAgagggCCa -3'
miRNA:   3'- cCCCGGa----CGGGGuuuGGUGUUUaa---GG- -5'
33288 3' -52.8 NC_007605.1 + 161274 0.7 0.876814
Target:  5'- -cGGCCUgcuugcgcagcccaGCCCCGggGGCCugcaGCAGGUUCCu -3'
miRNA:   3'- ccCCGGA--------------CGGGGU--UUGG----UGUUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.