miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 69534 0.66 0.694386
Target:  5'- aUCUCCCCgggcgcagaaaaugcUGCGUCUCCGCUCGa---- -3'
miRNA:   3'- -GGAGGGG---------------AUGCGGGGGCGGGCagaaa -5'
33290 3' -62 NC_007605.1 + 169879 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 170417 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 171477 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 170939 0.66 0.690542
Target:  5'- --cCCCCUGCGaCCCUGCCCccucaucacgGUCa-- -3'
miRNA:   3'- ggaGGGGAUGCgGGGGCGGG----------CAGaaa -5'
33290 3' -62 NC_007605.1 + 159548 0.66 0.680904
Target:  5'- gCCUCCuCCU-CGCCUCgGCCCa----- -3'
miRNA:   3'- -GGAGG-GGAuGCGGGGgCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 62122 0.66 0.661525
Target:  5'- cUCUCCCCcgcCGgCCCCGCCCc----- -3'
miRNA:   3'- -GGAGGGGau-GCgGGGGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 169485 0.66 0.661525
Target:  5'- gCCUCCCCUACGguuaCCCCacaGCCuUGcCUc- -3'
miRNA:   3'- -GGAGGGGAUGC----GGGGg--CGG-GCaGAaa -5'
33290 3' -62 NC_007605.1 + 58752 0.66 0.661525
Target:  5'- --gCCCCggGCaCCCCCGCCCauGUCa-- -3'
miRNA:   3'- ggaGGGGa-UGcGGGGGCGGG--CAGaaa -5'
33290 3' -62 NC_007605.1 + 61644 0.66 0.6518
Target:  5'- gCC-CCUCUACGCCCgCCGCCg------ -3'
miRNA:   3'- -GGaGGGGAUGCGGG-GGCGGgcagaaa -5'
33290 3' -62 NC_007605.1 + 91611 0.66 0.6518
Target:  5'- -aUCCCCguggGCcaaccgGCCCCUGCCUGccUCUUUg -3'
miRNA:   3'- ggAGGGGa---UG------CGGGGGCGGGC--AGAAA- -5'
33290 3' -62 NC_007605.1 + 134574 0.67 0.642061
Target:  5'- --gCCCUgggGCGCCCCuCGCCCaugCUUg -3'
miRNA:   3'- ggaGGGGa--UGCGGGG-GCGGGca-GAAa -5'
33290 3' -62 NC_007605.1 + 136966 0.67 0.642061
Target:  5'- uCCUCCCCcgggaauaGC-CCCCCGCCU-UCUUc -3'
miRNA:   3'- -GGAGGGGa-------UGcGGGGGCGGGcAGAAa -5'
33290 3' -62 NC_007605.1 + 121437 0.67 0.642061
Target:  5'- cCCgggCCUCUACaGCCCCUGCCgGg---- -3'
miRNA:   3'- -GGa--GGGGAUG-CGGGGGCGGgCagaaa -5'
33290 3' -62 NC_007605.1 + 94996 0.67 0.642061
Target:  5'- aCCUCCCCUGCuguuCCCCCaguuuGCCCcaUCg-- -3'
miRNA:   3'- -GGAGGGGAUGc---GGGGG-----CGGGc-AGaaa -5'
33290 3' -62 NC_007605.1 + 77500 0.67 0.636213
Target:  5'- aCCUCCCagcacuucuagcaaaCUGCGgCCCCGCUgGaCUUUu -3'
miRNA:   3'- -GGAGGG---------------GAUGCgGGGGCGGgCaGAAA- -5'
33290 3' -62 NC_007605.1 + 171568 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 171030 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 170508 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5'
33290 3' -62 NC_007605.1 + 169970 0.67 0.632315
Target:  5'- aCCgCCUCUcUGUCCCCGCCCccuGUCa-- -3'
miRNA:   3'- -GGaGGGGAuGCGGGGGCGGG---CAGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.