miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 127955 0.66 0.778323
Target:  5'- -aGC-UGGGCAau-GCCCCcGCCGCGc -3'
miRNA:   3'- caCGuACUCGUgguCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 91528 0.66 0.778323
Target:  5'- -cGCc--AGCcCCGguGCCCCAGCCACu -3'
miRNA:   3'- caCGuacUCGuGGU--CGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 160632 0.66 0.769041
Target:  5'- -gGCGuUGcGCACCA-CCgCAGCCACGu -3'
miRNA:   3'- caCGU-ACuCGUGGUcGGgGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 42549 0.66 0.769041
Target:  5'- -gGCAUGcauGCACCAGgCCauccaGGCCAa- -3'
miRNA:   3'- caCGUACu--CGUGGUCgGGg----UCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 68286 0.66 0.769041
Target:  5'- -gGCGgcGGCGCuUAGCCUCuGCCGCAu -3'
miRNA:   3'- caCGUacUCGUG-GUCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 107982 0.66 0.769041
Target:  5'- cGUGCGcGAGgGCCuaGGCCUCGGCuCugAc -3'
miRNA:   3'- -CACGUaCUCgUGG--UCGGGGUCG-GugU- -5'
33291 3' -59.2 NC_007605.1 + 47853 0.66 0.769041
Target:  5'- -aGC-UGGGgGCCuGCCCCAaaCCACAa -3'
miRNA:   3'- caCGuACUCgUGGuCGGGGUc-GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 67755 0.66 0.759638
Target:  5'- -gGCAgaaucaccaGAGC-CCagaggaGGCCCCGGCCGCc -3'
miRNA:   3'- caCGUa--------CUCGuGG------UCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 45185 0.66 0.759638
Target:  5'- cUGCGaaUGGuCGCCAGCCuCCGGUCugGu -3'
miRNA:   3'- cACGU--ACUcGUGGUCGG-GGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 136689 0.66 0.750125
Target:  5'- -gGCcgGGGCgACC-GCUCCGGCCcCAg -3'
miRNA:   3'- caCGuaCUCG-UGGuCGGGGUCGGuGU- -5'
33291 3' -59.2 NC_007605.1 + 50693 0.66 0.740509
Target:  5'- gGUGCAUuGGCACCGcGCCCCcaaaaaaCGCAa -3'
miRNA:   3'- -CACGUAcUCGUGGU-CGGGGucg----GUGU- -5'
33291 3' -59.2 NC_007605.1 + 159684 0.66 0.7308
Target:  5'- -cGCGUcgcccgagGAGCugUAGaCCCC-GCCGCAg -3'
miRNA:   3'- caCGUA--------CUCGugGUC-GGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 159713 0.66 0.7308
Target:  5'- -cGCAgaaGAGcCGCUccguGGCCCCgggAGCCACGg -3'
miRNA:   3'- caCGUa--CUC-GUGG----UCGGGG---UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 40176 0.66 0.7308
Target:  5'- -aGCAgggaggGGGCGucccgggaccCCAGCCCCcAGCCgGCAa -3'
miRNA:   3'- caCGUa-----CUCGU----------GGUCGGGG-UCGG-UGU- -5'
33291 3' -59.2 NC_007605.1 + 65216 0.66 0.729825
Target:  5'- uGUGCGccgagGuGCugCAGCCCUcgaggaagucuguGGCCACc -3'
miRNA:   3'- -CACGUa----CuCGugGUCGGGG-------------UCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 2595 0.67 0.721008
Target:  5'- cUGUuuAUGAGaCGCCAGCacCCCGGCCu-- -3'
miRNA:   3'- cACG--UACUC-GUGGUCG--GGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 111959 0.67 0.721008
Target:  5'- -aGCAgaauaGGGCcCCuuuuGCCCCGuGCCGCAg -3'
miRNA:   3'- caCGUa----CUCGuGGu---CGGGGU-CGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 164428 0.67 0.721008
Target:  5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3'
miRNA:   3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 103066 0.67 0.721008
Target:  5'- -aGC---GGCGUCAGCCCCcGCCGCAg -3'
miRNA:   3'- caCGuacUCGUGGUCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 61452 0.67 0.721008
Target:  5'- -gGCA--GGCcCCGGCCCCGGCUcCGg -3'
miRNA:   3'- caCGUacUCGuGGUCGGGGUCGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.