Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33291 | 3' | -59.2 | NC_007605.1 | + | 165954 | 0.67 | 0.681175 |
Target: 5'- gGUGCcaAUGGGCGCgGGUCCCccuAGCCcCGg -3' miRNA: 3'- -CACG--UACUCGUGgUCGGGG---UCGGuGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164428 | 0.67 | 0.721008 |
Target: 5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3' miRNA: 3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164143 | 0.68 | 0.629533 |
Target: 5'- cUGCAUGAuGC-CCAagguaucGCCCCGGCCuccCAg -3' miRNA: 3'- cACGUACU-CGuGGU-------CGGGGUCGGu--GU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 162956 | 0.7 | 0.520477 |
Target: 5'- cUGCGaGGGC-CgGGCCCCGGCCGu- -3' miRNA: 3'- cACGUaCUCGuGgUCGGGGUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 161390 | 0.68 | 0.650852 |
Target: 5'- --cCGUGaAGCGCCGGaCCCaAGCCGCGa -3' miRNA: 3'- cacGUAC-UCGUGGUC-GGGgUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160745 | 0.67 | 0.71114 |
Target: 5'- cGUGCAUGcAGCGCCcuGUCCCuggAGCUgguGCAc -3' miRNA: 3'- -CACGUAC-UCGUGGu-CGGGG---UCGG---UGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160632 | 0.66 | 0.769041 |
Target: 5'- -gGCGuUGcGCACCA-CCgCAGCCACGu -3' miRNA: 3'- caCGU-ACuCGUGGUcGGgGUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160534 | 0.68 | 0.620395 |
Target: 5'- -aGCAgGuGCACCAGCUCCAGggACAg -3' miRNA: 3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159713 | 0.66 | 0.7308 |
Target: 5'- -cGCAgaaGAGcCGCUccguGGCCCCgggAGCCACGg -3' miRNA: 3'- caCGUa--CUC-GUGG----UCGGGG---UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159684 | 0.66 | 0.7308 |
Target: 5'- -cGCGUcgcccgagGAGCugUAGaCCCC-GCCGCAg -3' miRNA: 3'- caCGUA--------CUCGugGUC-GGGGuCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159320 | 0.69 | 0.590016 |
Target: 5'- -cGCAUGcGgGCCAGCuCCCAGuagaCCACGu -3' miRNA: 3'- caCGUACuCgUGGUCG-GGGUC----GGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159036 | 0.69 | 0.578935 |
Target: 5'- cUGCGccGGGCGgacgcggUCAGCCCCGGCCAg- -3' miRNA: 3'- cACGUa-CUCGU-------GGUCGGGGUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 154827 | 0.67 | 0.671096 |
Target: 5'- cUGCGUGcAGgACuCGGCCCUGGUCAUg -3' miRNA: 3'- cACGUAC-UCgUG-GUCGGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 150919 | 0.67 | 0.671096 |
Target: 5'- -gGUcgGcuGGCACCAGgCCUGGCCAUg -3' miRNA: 3'- caCGuaC--UCGUGGUCgGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 150141 | 0.68 | 0.620395 |
Target: 5'- cUGCAUGGGCuCCuccgggguaAGCUUCGGCCAUg -3' miRNA: 3'- cACGUACUCGuGG---------UCGGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 148986 | 0.74 | 0.301313 |
Target: 5'- -aGCGUGAGCGCgCAGCCCU-GCCGu- -3' miRNA: 3'- caCGUACUCGUG-GUCGGGGuCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 141706 | 0.67 | 0.671096 |
Target: 5'- -gGCGggGGGUGCCGGCUgCAGCCGg- -3' miRNA: 3'- caCGUa-CUCGUGGUCGGgGUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 136689 | 0.66 | 0.750125 |
Target: 5'- -gGCcgGGGCgACC-GCUCCGGCCcCAg -3' miRNA: 3'- caCGuaCUCG-UGGuCGGGGUCGGuGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 136497 | 0.7 | 0.540071 |
Target: 5'- -gGCcgGAGCGgUcGCCCCGGCCGg- -3' miRNA: 3'- caCGuaCUCGUgGuCGGGGUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 135264 | 0.68 | 0.61025 |
Target: 5'- -cGCA-GGGCGCCGGaCCUgAGCCAg- -3' miRNA: 3'- caCGUaCUCGUGGUC-GGGgUCGGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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