Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 13823 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 133134 | 0.69 | 0.645274 |
Target: 5'- -cGGUGGUGGaggugGGGAGGGUcuuuUGGCC-Ca -3' miRNA: 3'- cuCCACCACUg----UCCUCCCG----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 50136 | 0.97 | 0.010412 |
Target: 5'- gGAGGUGGUGACAGGAGGGUcGACCUCc -3' miRNA: 3'- -CUCCACCACUGUCCUCCCGaCUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 35305 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 32236 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 29167 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 26099 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 23030 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 19961 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 35115 | 0.69 | 0.645274 |
Target: 5'- uGGGcGGcuGCAGGGGGGCUGACa-- -3' miRNA: 3'- cUCCaCCacUGUCCUCCCGACUGgag -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 17099 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 20167 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 17159 | 0.71 | 0.497222 |
Target: 5'- cAGGccUGGUGACAGGGcgcgcauGGCUGAgCCUCu -3' miRNA: 3'- cUCC--ACCACUGUCCUc------CCGACU-GGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 14030 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 32443 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 23236 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 99397 | 0.69 | 0.625152 |
Target: 5'- uGGGGcUGGUGGCcuGGGAGGuGCUGAggcCCg- -3' miRNA: 3'- -CUCC-ACCACUG--UCCUCC-CGACU---GGag -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 125574 | 0.66 | 0.816538 |
Target: 5'- gGAGGUGGgcagcgugGuCAGGGuGGGCagagGACCa- -3' miRNA: 3'- -CUCCACCa-------CuGUCCU-CCCGa---CUGGag -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 29374 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
|||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 26305 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home