Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 39977 | 0.66 | 0.732819 |
Target: 5'- cUGG-GGUCCCg---GGAcgCCCCCUCCc -3' miRNA: 3'- -AUCaCCAGGGgaggCCUa-GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 33573 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 27435 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 21297 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 18228 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 15159 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 24366 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 12090 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 30504 | 0.66 | 0.713945 |
Target: 5'- ------cCCCCUCCccGUCCCCCUUCg -3' miRNA: 3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 136649 | 0.66 | 0.704409 |
Target: 5'- ---cGGgCCUCUuuGGc-CCCCCUCCa -3' miRNA: 3'- aucaCCaGGGGAggCCuaGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 136974 | 0.66 | 0.704409 |
Target: 5'- gGGUGGcgUCCuCCcCCGGGaauagCCCCCcgCCu -3' miRNA: 3'- aUCACC--AGG-GGaGGCCUa----GGGGGa-GG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 61172 | 0.66 | 0.704409 |
Target: 5'- cUGGcUGGUCUCCUUCGGcagcgaCCuggCCCUCCc -3' miRNA: 3'- -AUC-ACCAGGGGAGGCCua----GG---GGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 18167 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 24305 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 21236 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 30443 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 12029 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 27374 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 33512 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 15098 | 0.66 | 0.694817 |
Target: 5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3' miRNA: 3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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