miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 3' -57.7 NC_007605.1 + 103546 0.66 0.893042
Target:  5'- cGGGGGAGAucauggcaucCGGcaagcaccaucagcCCGGGGGGAcacGGa -3'
miRNA:   3'- -UCCCCUCU----------GCCu-------------GGUCCCCCUuuuCC- -5'
33295 3' -57.7 NC_007605.1 + 23969 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 17831 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 33175 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 40674 0.66 0.882421
Target:  5'- uGGGGuAGGCGGAgccUCAGGaGGGuccccuccauAGGg -3'
miRNA:   3'- uCCCC-UCUGCCU---GGUCC-CCCuuu-------UCC- -5'
33295 3' -57.7 NC_007605.1 + 168749 0.66 0.876908
Target:  5'- gAGGaGGAGAaGGAgagcaaggcCUAGGGaagaGGAGAGGGg -3'
miRNA:   3'- -UCC-CCUCUgCCU---------GGUCCC----CCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 112054 0.66 0.862551
Target:  5'- -aGGGAGugGGucuucaggcACCAGGGaGGuccAGGu -3'
miRNA:   3'- ucCCCUCugCC---------UGGUCCC-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 85907 0.66 0.876908
Target:  5'- uGGGGcaACaGACUGcGGGGAGGAGGg -3'
miRNA:   3'- uCCCCucUGcCUGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 139463 0.66 0.883778
Target:  5'- uGGGGAGGgGGGgUGGGuacGGGAGAguuuGGGc -3'
miRNA:   3'- uCCCCUCUgCCUgGUCC---CCCUUU----UCC- -5'
33295 3' -57.7 NC_007605.1 + 143490 0.66 0.882421
Target:  5'- uGGGGuAGGCGGAgccUCAGGaGGGuccccuccauAGGg -3'
miRNA:   3'- uCCCC-UCUGCCU---GGUCC-CCCuuu-------UCC- -5'
33295 3' -57.7 NC_007605.1 + 27038 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 56647 0.66 0.862551
Target:  5'- cGGGcGGAGAUcagGaGGCgGGGGaaGGAGGAGGa -3'
miRNA:   3'- -UCC-CCUCUG---C-CUGgUCCC--CCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 20900 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 58087 0.66 0.890438
Target:  5'- cGGGGccGCGGagGCCGGGGccgcGGAGGccGGGg -3'
miRNA:   3'- uCCCCucUGCC--UGGUCCC----CCUUU--UCC- -5'
33295 3' -57.7 NC_007605.1 + 49885 0.66 0.874101
Target:  5'- cGGGGcGGCGGuggaugagaggAGGGGGAuccGGAGGg -3'
miRNA:   3'- uCCCCuCUGCCugg--------UCCCCCU---UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 14762 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 13763 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 71116 0.66 0.890438
Target:  5'- uAGGGucaGAGA-GG-CCAGGGGGcu-GGGc -3'
miRNA:   3'- -UCCC---CUCUgCCuGGUCCCCCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 30107 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 133120 0.66 0.876908
Target:  5'- gAGcGGGAGGCcgaaaGGGCCAGGucGGAGcgguGGGa -3'
miRNA:   3'- -UC-CCCUCUG-----CCUGGUCCc-CCUUu---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.