miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 3' -57.7 NC_007605.1 + 153924 0.7 0.703663
Target:  5'- cGGGGAGG-GGGCCAGGGccugcagguuggcGGGGcucAGGGc -3'
miRNA:   3'- uCCCCUCUgCCUGGUCCC-------------CCUU---UUCC- -5'
33295 3' -57.7 NC_007605.1 + 66400 0.71 0.605652
Target:  5'- cAGGGGAG--GGACCAGGuGGGu---GGu -3'
miRNA:   3'- -UCCCCUCugCCUGGUCC-CCCuuuuCC- -5'
33295 3' -57.7 NC_007605.1 + 169997 0.71 0.64543
Target:  5'- cGGGGGGugGGGCaUGGGGGGc----- -3'
miRNA:   3'- uCCCCUCugCCUG-GUCCCCCuuuucc -5'
33295 3' -57.7 NC_007605.1 + 171057 0.71 0.64543
Target:  5'- cGGGGGGugGGGCaUGGGGGGc----- -3'
miRNA:   3'- uCCCCUCugCCUG-GUCCCCCuuuucc -5'
33295 3' -57.7 NC_007605.1 + 64713 0.7 0.665289
Target:  5'- uAGGGGuGACGGgggcugGCCAGGauGGGAAAc-- -3'
miRNA:   3'- -UCCCCuCUGCC------UGGUCC--CCCUUUucc -5'
33295 3' -57.7 NC_007605.1 + 37199 0.7 0.665289
Target:  5'- --cGGGGACaGAgCAGGGGGAGGggcAGGg -3'
miRNA:   3'- uccCCUCUGcCUgGUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 95903 0.7 0.694867
Target:  5'- gAGGGGcaGGAgGGGCaggAGGGGcAGGAGGg -3'
miRNA:   3'- -UCCCC--UCUgCCUGg--UCCCCcUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 58039 0.7 0.694867
Target:  5'- gAGGGGAGGgcUGGagGCCGGGGccgcGGAGGccGGGg -3'
miRNA:   3'- -UCCCCUCU--GCC--UGGUCCC----CCUUU--UCC- -5'
33295 3' -57.7 NC_007605.1 + 40282 0.7 0.703663
Target:  5'- cGGGGGAGgaccGCGGccgaGCCAccaggggcccggcGGGGGugGGGGg -3'
miRNA:   3'- -UCCCCUC----UGCC----UGGU-------------CCCCCuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 43061 0.72 0.579928
Target:  5'- cGGGuGAGAgccuauacugcagccCaGACuCGGGGGGAGGAGGa -3'
miRNA:   3'- uCCC-CUCU---------------GcCUG-GUCCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 95668 0.72 0.566168
Target:  5'- aGGGGGuGAuaaccaUGGACgAGgacGGGGAAGAGGa -3'
miRNA:   3'- -UCCCCuCU------GCCUGgUC---CCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 75636 0.73 0.531216
Target:  5'- gGGGGGGGcACGGugagugUCAcugagacggucugauGGGGGAAGAGGg -3'
miRNA:   3'- -UCCCCUC-UGCCu-----GGU---------------CCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 96649 0.77 0.331226
Target:  5'- aGGGGGGGAagucgugaaaGaGCCAGGGGGAGAGGu -3'
miRNA:   3'- -UCCCCUCUg---------CcUGGUCCCCCUUUUCc -5'
33295 3' -57.7 NC_007605.1 + 63080 0.76 0.352824
Target:  5'- cGGGGGAGgugGCGGucGCCGGGGGuggcaguGGAGGGGg -3'
miRNA:   3'- -UCCCCUC---UGCC--UGGUCCCC-------CUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 54181 0.75 0.385025
Target:  5'- uGGGcGGGGCGGuuGCCuGGGGGAuaguuGGAGGa -3'
miRNA:   3'- uCCC-CUCUGCC--UGGuCCCCCU-----UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 108014 0.75 0.389897
Target:  5'- gAGGGGAGGCGGGaauuggguuaagaUAGGGGcGAAGGGu -3'
miRNA:   3'- -UCCCCUCUGCCUg------------GUCCCCcUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 48423 0.75 0.418257
Target:  5'- gGGGGGAgaaaGACGGGCgGGGGcguaGggGAGGa -3'
miRNA:   3'- -UCCCCU----CUGCCUGgUCCCc---CuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 73163 0.74 0.435515
Target:  5'- gGGGuGGAGACGaccuccGCCAGGuGGGAugaGAAGGg -3'
miRNA:   3'- -UCC-CCUCUGCc-----UGGUCC-CCCU---UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 51206 0.73 0.489622
Target:  5'- cGGGGuaacugucACGucCCGGGGGGAGGAGGu -3'
miRNA:   3'- uCCCCuc------UGCcuGGUCCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 169305 0.73 0.527378
Target:  5'- uAGGGGAGGCGGGugAGGcGGcuAAGAGGg -3'
miRNA:   3'- -UCCCCUCUGCCUggUCCcCC--UUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.