miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 3' -57.7 NC_007605.1 + 5931 0.66 0.896884
Target:  5'- gAGGGcuGGGCccgGGGCUAGGGGGAc---- -3'
miRNA:   3'- -UCCCc-UCUG---CCUGGUCCCCCUuuucc -5'
33295 3' -57.7 NC_007605.1 + 12232 0.72 0.566168
Target:  5'- cAGGGuugcuGAGGCcgGGGuCCAGGGGGAcccGAGGGc -3'
miRNA:   3'- -UCCC-----CUCUG--CCU-GGUCCCCCU---UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 12279 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 12324 0.75 0.409786
Target:  5'- gGGGGGcAGGCggcccuacuggGGACCGGGGGaGGAAcAGGa -3'
miRNA:   3'- -UCCCC-UCUG-----------CCUGGUCCCC-CUUU-UCC- -5'
33295 3' -57.7 NC_007605.1 + 13069 0.74 0.444296
Target:  5'- gAGGGGAG-CGGAgaCCAGGaGGGcgccuGGAGGc -3'
miRNA:   3'- -UCCCCUCuGCCU--GGUCC-CCCu----UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 13315 0.77 0.324007
Target:  5'- gAGGGaGAGGCucGGGCCuggAGGGGaGGAGAGGg -3'
miRNA:   3'- -UCCC-CUCUG--CCUGG---UCCCC-CUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 13383 0.67 0.838764
Target:  5'- uGGGGGGAucCGGGCCAcucgggucucgguGGGGcuGGAcuuGAGGg -3'
miRNA:   3'- uCCCCUCU--GCCUGGU-------------CCCC--CUU---UUCC- -5'
33295 3' -57.7 NC_007605.1 + 13422 0.73 0.508352
Target:  5'- aAGGuuGGAGA-GGAgCAGGGGGAcagagaGAAGGg -3'
miRNA:   3'- -UCC--CCUCUgCCUgGUCCCCCU------UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 13543 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 13693 0.68 0.796896
Target:  5'- --aGGAGACuGGGCCucaggcuGGGGGGAGAAa- -3'
miRNA:   3'- uccCCUCUG-CCUGG-------UCCCCCUUUUcc -5'
33295 3' -57.7 NC_007605.1 + 13763 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 13829 0.72 0.556391
Target:  5'- cGGGacuGGGGUGGACaCAGGGGGGcgGGGa -3'
miRNA:   3'- uCCC---CUCUGCCUG-GUCCCCCUuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 13949 0.77 0.316906
Target:  5'- cGGGGGucGGGCuGGgccGCCAGGGGGGcaAAAGGg -3'
miRNA:   3'- -UCCCC--UCUG-CC---UGGUCCCCCU--UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 14039 0.75 0.401422
Target:  5'- uGGGGGGACcgGGGCaguggaCAGGGGcGGGAGGGg -3'
miRNA:   3'- uCCCCUCUG--CCUG------GUCCCC-CUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 14645 0.67 0.8225
Target:  5'- aAGGGGAaaaguuaGAaacUGGGCCcgaguccuuggAGGGGGcgGAGGg -3'
miRNA:   3'- -UCCCCU-------CU---GCCUGG-----------UCCCCCuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 14762 0.66 0.876908
Target:  5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3'
miRNA:   3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 15174 0.67 0.846633
Target:  5'- gAGGacGGGGACGGAgggggccugaagcCCGGGgacuGGGAAcuGAGGa -3'
miRNA:   3'- -UCC--CCUCUGCCU-------------GGUCC----CCCUU--UUCC- -5'
33295 3' -57.7 NC_007605.1 + 15301 0.72 0.566168
Target:  5'- cAGGGuugcuGAGGCcgGGGuCCAGGGGGAcccGAGGGc -3'
miRNA:   3'- -UCCC-----CUCUG--CCU-GGUCCCCCU---UUUCC- -5'
33295 3' -57.7 NC_007605.1 + 15348 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 15393 0.74 0.462152
Target:  5'- gGGGGGcAGGCGGcccuACUGGGGaccGGggGAGGa -3'
miRNA:   3'- -UCCCC-UCUGCC----UGGUCCC---CCuuUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.