miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 3' -57.7 NC_007605.1 + 51537 1.11 0.001897
Target:  5'- gAGGGGAGACGGACCAGGGGGAAAAGGg -3'
miRNA:   3'- -UCCCCUCUGCCUGGUCCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 62320 0.8 0.213872
Target:  5'- cAGuGGGGGCgGGGCCGGcGGGGGAGAGGg -3'
miRNA:   3'- -UCcCCUCUG-CCUGGUC-CCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 157469 0.79 0.258271
Target:  5'- uGGGGGcGAUGGACUgcuGGGGGguGAGGa -3'
miRNA:   3'- -UCCCCuCUGCCUGGu--CCCCCuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 16612 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 31957 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 35026 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 25819 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 28888 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 19681 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 22750 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 13543 0.78 0.264322
Target:  5'- gGGuGGGAGGCGGgaaggagagGCCA-GGGGAGAGGGa -3'
miRNA:   3'- -UC-CCCUCUGCC---------UGGUcCCCCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 144050 0.78 0.289679
Target:  5'- aAGGGaGGGgGGGgUAGGGGGggGAGGg -3'
miRNA:   3'- -UCCCcUCUgCCUgGUCCCCCuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 41234 0.78 0.289679
Target:  5'- aAGGGaGGGgGGGgUAGGGGGggGAGGg -3'
miRNA:   3'- -UCCCcUCUgCCUgGUCCCCCuuUUCC- -5'
33295 3' -57.7 NC_007605.1 + 15348 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 33762 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 30693 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 27624 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 24555 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 21486 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5'
33295 3' -57.7 NC_007605.1 + 18417 0.77 0.29631
Target:  5'- aAGGGG-GACGGGgaGGGGGGGAGgcuGGGg -3'
miRNA:   3'- -UCCCCuCUGCCUggUCCCCCUUU---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.