miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 60555 0.65 0.966919
Target:  5'- aCCCGAGaCCAgaaaGCGGCGgguggCCAGGc- -3'
miRNA:   3'- gGGGCUUaGGUg---CGUUGCa----GGUCCuc -5'
33296 3' -55 NC_007605.1 + 116609 0.65 0.966919
Target:  5'- gUCUGAcauUCCACcccgGCcAgGUCCAGGAGg -3'
miRNA:   3'- gGGGCUu--AGGUG----CGuUgCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 134179 0.65 0.966919
Target:  5'- gCCCCGGgcacGUUCAgCGCGGcCGUCguGGGc -3'
miRNA:   3'- -GGGGCU----UAGGU-GCGUU-GCAGguCCUc -5'
33296 3' -55 NC_007605.1 + 132627 0.65 0.966919
Target:  5'- aCCCCGGgugggAUCCAUGgCugGAUuUCCAGGAa -3'
miRNA:   3'- -GGGGCU-----UAGGUGC-G--UUGcAGGUCCUc -5'
33296 3' -55 NC_007605.1 + 170874 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 61938 0.66 0.963724
Target:  5'- -gCCGGAgCCGgGCGGCGUcaaaggCCAGGAc -3'
miRNA:   3'- ggGGCUUaGGUgCGUUGCA------GGUCCUc -5'
33296 3' -55 NC_007605.1 + 170352 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 171412 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 169815 0.66 0.963724
Target:  5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3'
miRNA:   3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5'
33296 3' -55 NC_007605.1 + 3879 0.66 0.963724
Target:  5'- --gCGuAGUCCGCcaGCGGCagGUCCAGGGGa -3'
miRNA:   3'- gggGC-UUAGGUG--CGUUG--CAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 48857 0.66 0.961708
Target:  5'- gCCCCGAAUCCGgGCAgugcugccgcacaacGCGgCCuacGAGc -3'
miRNA:   3'- -GGGGCUUAGGUgCGU---------------UGCaGGuc-CUC- -5'
33296 3' -55 NC_007605.1 + 48821 0.66 0.960321
Target:  5'- -aCCGcAGUCCAUGCAaaacACGgCCaaGGGAGg -3'
miRNA:   3'- ggGGC-UUAGGUGCGU----UGCaGG--UCCUC- -5'
33296 3' -55 NC_007605.1 + 4419 0.66 0.960321
Target:  5'- uCCCUGGAUCUugccaucccCGCAACGcaccgcaaUCAGGAGa -3'
miRNA:   3'- -GGGGCUUAGGu--------GCGUUGCa-------GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 31072 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 34141 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 125299 0.66 0.956703
Target:  5'- uUCUGAGUCCGgGCAcCGUCCcuggcccccuuGGAGu -3'
miRNA:   3'- gGGGCUUAGGUgCGUuGCAGGu----------CCUC- -5'
33296 3' -55 NC_007605.1 + 127177 0.66 0.956703
Target:  5'- cUCCUGAggcacAUCCGC-CGACGUCUGGGc- -3'
miRNA:   3'- -GGGGCU-----UAGGUGcGUUGCAGGUCCuc -5'
33296 3' -55 NC_007605.1 + 21866 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 153505 0.66 0.956703
Target:  5'- gCCCCaGAUCCAcgacCGCAuccaguACGUCUuuguGGAGc -3'
miRNA:   3'- -GGGGcUUAGGU----GCGU------UGCAGGu---CCUC- -5'
33296 3' -55 NC_007605.1 + 15728 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.