Results 1 - 20 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33300 | 5' | -62.7 | NC_007605.1 | + | 61099 | 0.66 | 0.677574 |
Target: 5'- aGGGGCuGUGGAcauaGgCCgGAUCCGcGCGc -3' miRNA: 3'- -CCCCGuUACCU----CgGGgCUGGGC-CGCc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 27866 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 153924 | 0.66 | 0.657546 |
Target: 5'- cGGGGag--GGGGCCagGGCCUgcagguuGGCGGg -3' miRNA: 3'- -CCCCguuaCCUCGGggCUGGG-------CCGCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 131624 | 0.66 | 0.683273 |
Target: 5'- uGGGuCAcaauuggaacccgcAUGcucuccuuccucuGAGCCuuGGCCUGGCGGg -3' miRNA: 3'- cCCC-GU--------------UAC-------------CUCGGggCUGGGCCGCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 129959 | 0.66 | 0.687065 |
Target: 5'- uGGGCAcugguuaaggAUGGguaacuaaaaGGCCCCcucaGAUCCGGCaGGu -3' miRNA: 3'- cCCCGU----------UACC----------UCGGGG----CUGGGCCG-CC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 59367 | 0.66 | 0.69085 |
Target: 5'- gGGGGCAGgaggucucaaccuucUGG-GCUCgGGCCgCGGUGu -3' miRNA: 3'- -CCCCGUU---------------ACCuCGGGgCUGG-GCCGCc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 54432 | 0.66 | 0.677574 |
Target: 5'- aGGGCcgaacgGAUGGcaucGGCCgCCGuCCUGGCGc -3' miRNA: 3'- cCCCG------UUACC----UCGG-GGCuGGGCCGCc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 134931 | 0.66 | 0.687065 |
Target: 5'- gGGGGCGAaGGcGUgCCCGAaCCCGGg-- -3' miRNA: 3'- -CCCCGUUaCCuCG-GGGCU-GGGCCgcc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 18659 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 139058 | 0.66 | 0.658502 |
Target: 5'- gGGGGgGggGGGGCUCUGuaacAUuuGGUGGg -3' miRNA: 3'- -CCCCgUuaCCUCGGGGC----UGggCCGCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 34003 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 30946 | 0.66 | 0.668051 |
Target: 5'- gGGaGGCAGaGGgucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CC-CCGUUaCC---UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 158134 | 0.66 | 0.668051 |
Target: 5'- gGGGGCGucAUaGAGCUCCG-UCUGGCuGGc -3' miRNA: 3'- -CCCCGU--UAcCUCGGGGCuGGGCCG-CC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 50358 | 0.66 | 0.648935 |
Target: 5'- cGGGGCcgcGGUGGGcuGCCCCcgaggacgGGCgCCGGCc- -3' miRNA: 3'- -CCCCG---UUACCU--CGGGG--------CUG-GGCCGcc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 15590 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 12521 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 40241 | 0.66 | 0.658502 |
Target: 5'- aGGGGUccaGggGGcAGCCgCGGCCCaGCGc -3' miRNA: 3'- -CCCCG---UuaCC-UCGGgGCUGGGcCGCc -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 87424 | 0.66 | 0.689904 |
Target: 5'- cGGGCccuuccgaAcaaucaucagugaccGUGGAGCccgcccaCCCGACCCcGGUGGa -3' miRNA: 3'- cCCCG--------U---------------UACCUCG-------GGGCUGGG-CCGCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 21728 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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33300 | 5' | -62.7 | NC_007605.1 | + | 24797 | 0.66 | 0.657546 |
Target: 5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3' miRNA: 3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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