miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 3546 0.69 0.507452
Target:  5'- aGGGGaaccGUGGAGCCCagcacauaGugCUGGCa- -3'
miRNA:   3'- -CCCCgu--UACCUCGGGg-------CugGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 3935 0.73 0.295633
Target:  5'- aGGGCAAgggaGGAGCCCCaccgGGCCUGGUc- -3'
miRNA:   3'- cCCCGUUa---CCUCGGGG----CUGGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 4390 0.72 0.355715
Target:  5'- gGGGGCcuggugaccugccuGGUGGAgaugGCCCUGGCCgGGCa- -3'
miRNA:   3'- -CCCCG--------------UUACCU----CGGGGCUGGgCCGcc -5'
33300 5' -62.7 NC_007605.1 + 4868 0.67 0.629771
Target:  5'- cGGGCAccaGGGGCCauGAaagccuCCUGGCGGc -3'
miRNA:   3'- cCCCGUua-CCUCGGggCU------GGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 5156 0.7 0.460348
Target:  5'- gGGGGCcGUGGGGUcaacagauaauccaCCCGcCCCuGGCGu -3'
miRNA:   3'- -CCCCGuUACCUCG--------------GGGCuGGG-CCGCc -5'
33300 5' -62.7 NC_007605.1 + 8362 0.67 0.601054
Target:  5'- uGGGCcccauuggcGUGGAGCCCCGuuuaauuUUCGGgGGu -3'
miRNA:   3'- cCCCGu--------UACCUCGGGGCu------GGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 11165 0.67 0.601054
Target:  5'- uGGGCAAaGGGGUCCUa--CgGGCGGg -3'
miRNA:   3'- cCCCGUUaCCUCGGGGcugGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 12521 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 12602 0.68 0.572517
Target:  5'- cGGGCGAUccucuGAGaCCCUccgGGCCCGGaCGGu -3'
miRNA:   3'- cCCCGUUAc----CUC-GGGG---CUGGGCC-GCC- -5'
33300 5' -62.7 NC_007605.1 + 12693 0.68 0.553668
Target:  5'- aGGGGCAGcaGGcucaccaccacaGGCCCCccaGACCCGGgucuCGGc -3'
miRNA:   3'- -CCCCGUUa-CC------------UCGGGG---CUGGGCC----GCC- -5'
33300 5' -62.7 NC_007605.1 + 12822 0.67 0.620189
Target:  5'- gGGGGCugaGGGcgaccGUCCgGGCCCGGaGGg -3'
miRNA:   3'- -CCCCGuuaCCU-----CGGGgCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 13028 0.67 0.620189
Target:  5'- aGGGGCucUGGGGUgCCCGAggucCCUGGUu- -3'
miRNA:   3'- -CCCCGuuACCUCG-GGGCU----GGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 13151 0.68 0.572517
Target:  5'- aGGGGCcucuuUGGgcccucaaguccAGCCCCaccgaGACCCGaGUGGc -3'
miRNA:   3'- -CCCCGuu---ACC------------UCGGGG-----CUGGGC-CGCC- -5'
33300 5' -62.7 NC_007605.1 + 13200 0.67 0.617316
Target:  5'- cGGGCugccGGGGUCCCuccggcuggccuggGACCCGG-GGa -3'
miRNA:   3'- cCCCGuua-CCUCGGGG--------------CUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 13494 0.71 0.411584
Target:  5'- cGGGCugccGGGGUCCCuccggcuGGCCUGGUGGa -3'
miRNA:   3'- cCCCGuua-CCUCGGGG-------CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 13607 0.7 0.475214
Target:  5'- cGGGCcgccGGGGuCCCUccggccggccugaugGACCCGGUGGg -3'
miRNA:   3'- cCCCGuua-CCUC-GGGG---------------CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 15169 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 15590 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 15671 0.68 0.572517
Target:  5'- cGGGCGAUccucuGAGaCCCUccgGGCCCGGaCGGu -3'
miRNA:   3'- cCCCGUUAc----CUC-GGGG---CUGGGCC-GCC- -5'
33300 5' -62.7 NC_007605.1 + 15762 0.68 0.553668
Target:  5'- aGGGGCAGcaGGcucaccaccacaGGCCCCccaGACCCGGgucuCGGc -3'
miRNA:   3'- -CCCCGUUa-CC------------UCGGGG---CUGGGCC----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.