miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 39137 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 91734 0.71 0.379105
Target:  5'- uGGGGCccgcaggcgcGGGGCCUCGGCCCuGGCc- -3'
miRNA:   3'- -CCCCGuua-------CCUCGGGGCUGGG-CCGcc -5'
33300 5' -62.7 NC_007605.1 + 165365 0.71 0.380649
Target:  5'- aGGGC-GUGGAGCCCgcaccaacugCGGCaaaUGGCGGu -3'
miRNA:   3'- cCCCGuUACCUCGGG----------GCUGg--GCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38263 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38388 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38513 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38638 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38763 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39012 0.71 0.404308
Target:  5'- uGGGGCAGccgggguuccUGGcGCUCCGggggcaGCCgGGCGGc -3'
miRNA:   3'- -CCCCGUU----------ACCuCGGGGC------UGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 171443 0.72 0.357934
Target:  5'- cGGGCAAUGGAgcgugacgaaggGCCCCagggcuGAcCCCGGCa- -3'
miRNA:   3'- cCCCGUUACCU------------CGGGG------CU-GGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 170905 0.72 0.357934
Target:  5'- cGGGCAAUGGAgcgugacgaaggGCCCCagggcuGAcCCCGGCa- -3'
miRNA:   3'- cCCCGUUACCU------------CGGGG------CU-GGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 170383 0.72 0.357934
Target:  5'- cGGGCAAUGGAgcgugacgaaggGCCCCagggcuGAcCCCGGCa- -3'
miRNA:   3'- cCCCGUUACCU------------CGGGG------CU-GGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 136494 0.74 0.264829
Target:  5'- uGGGGCc--GGAgcggucGCCCCGGCC-GGCGGc -3'
miRNA:   3'- -CCCCGuuaCCU------CGGGGCUGGgCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 165962 0.74 0.270774
Target:  5'- uGGGCGcgGGucCCCCuagcCCCGGCGGg -3'
miRNA:   3'- cCCCGUuaCCucGGGGcu--GGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 168789 0.72 0.336186
Target:  5'- gGGGGUccucgagGGGGCCgucgCgGGCCCGGUGGg -3'
miRNA:   3'- -CCCCGuua----CCUCGG----GgCUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 126064 0.72 0.343327
Target:  5'- aGGGCAgacggaugucagGUcGGGCCCgGACCCGGCccGGa -3'
miRNA:   3'- cCCCGU------------UAcCUCGGGgCUGGGCCG--CC- -5'
33300 5' -62.7 NC_007605.1 + 4390 0.72 0.355715
Target:  5'- gGGGGCcuggugaccugccuGGUGGAgaugGCCCUGGCCgGGCa- -3'
miRNA:   3'- -CCCCG--------------UUACCU----CGGGGCUGGgCCGcc -5'
33300 5' -62.7 NC_007605.1 + 71344 0.72 0.357934
Target:  5'- gGGGGCccuUGGGGCUCUGGgcgcucuugcuCCCGGgGGc -3'
miRNA:   3'- -CCCCGuu-ACCUCGGGGCU-----------GGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 48464 0.72 0.357934
Target:  5'- gGGGGCcggGGGGCCCUG-CCUGaGcCGGg -3'
miRNA:   3'- -CCCCGuuaCCUCGGGGCuGGGC-C-GCC- -5'
33300 5' -62.7 NC_007605.1 + 169845 0.72 0.357934
Target:  5'- cGGGCAAUGGAgcgugacgaaggGCCCCagggcuGAcCCCGGCa- -3'
miRNA:   3'- cCCCGUUACCU------------CGGGG------CU-GGGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.