miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 53381 1.12 0.000657
Target:  5'- uGGGGCAAUGGAGCCCCGACCCGGCGGg -3'
miRNA:   3'- -CCCCGUUACCUCGGGGCUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 59573 0.81 0.100322
Target:  5'- uGGGGCGGUGGugacaGGUCCCGgcugGCCCGGCGc -3'
miRNA:   3'- -CCCCGUUACC-----UCGGGGC----UGGGCCGCc -5'
33300 5' -62.7 NC_007605.1 + 142483 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142585 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 143298 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 143196 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 143094 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142992 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142789 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141973 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142075 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142177 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141464 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141566 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141668 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141770 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 141872 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142381 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142279 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 142687 0.79 0.13134
Target:  5'- cGGGGCAGcGGA-CCCagcgGACCCGGUGGg -3'
miRNA:   3'- -CCCCGUUaCCUcGGGg---CUGGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.