miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33324 5' -57.8 NC_007605.1 + 74237 0.66 0.86967
Target:  5'- -cGGUgaGcGGcGUGAGGCcgcgcaggaaggggaAGGCCUCCUc -3'
miRNA:   3'- caUCAgaU-CC-CACUCCG---------------UCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 162076 0.66 0.86674
Target:  5'- -aGGUCUGGcaGGUcGcAGGUGGGCUcCCCa -3'
miRNA:   3'- caUCAGAUC--CCA-C-UCCGUCCGGaGGG- -5'
33324 5' -57.8 NC_007605.1 + 91593 0.66 0.86674
Target:  5'- gGUGGgCUuugaGGGGUGGGGgaauaUGGGUCUCUCa -3'
miRNA:   3'- -CAUCaGA----UCCCACUCC-----GUCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 32437 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 23230 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 17093 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 93783 0.66 0.859271
Target:  5'- ---cUCUcccagAGGGUGAGGagAGGCCUgCUg -3'
miRNA:   3'- caucAGA-----UCCCACUCCg-UCCGGAgGG- -5'
33324 5' -57.8 NC_007605.1 + 26299 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 14024 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 29368 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 144085 0.66 0.859271
Target:  5'- -gGGUgCUGGGGUGGGGgaugggcuCAGGCaa-CCg -3'
miRNA:   3'- caUCA-GAUCCCACUCC--------GUCCGgagGG- -5'
33324 5' -57.8 NC_007605.1 + 41269 0.66 0.859271
Target:  5'- -gGGUgCUGGGGUGGGGgaugggcuCAGGCaa-CCg -3'
miRNA:   3'- caUCA-GAUCCCACUCC--------GUCCGgagGG- -5'
33324 5' -57.8 NC_007605.1 + 133533 0.66 0.854694
Target:  5'- cUGGgCUGGGGaUGgggaGGGCGGGgcuggcgcagagcgcCCUCCCg -3'
miRNA:   3'- cAUCaGAUCCC-AC----UCCGUCC---------------GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 78783 0.66 0.851603
Target:  5'- --uGUCUcGGGUcuuGGCAcGGCC-CCCa -3'
miRNA:   3'- cauCAGAuCCCAcu-CCGU-CCGGaGGG- -5'
33324 5' -57.8 NC_007605.1 + 45151 0.66 0.843741
Target:  5'- uUAGUCcaaacaUGGGGgccagGAGGCAGGgg-CCCu -3'
miRNA:   3'- cAUCAG------AUCCCa----CUCCGUCCggaGGG- -5'
33324 5' -57.8 NC_007605.1 + 155088 0.66 0.843741
Target:  5'- uUAGggCUGGGGgcgucugcGAGGuCAGGCgaCCCc -3'
miRNA:   3'- cAUCa-GAUCCCa-------CUCC-GUCCGgaGGG- -5'
33324 5' -57.8 NC_007605.1 + 105878 0.66 0.843741
Target:  5'- uGUGGgac-GGGcGAGGCcGGCCUUCUg -3'
miRNA:   3'- -CAUCagauCCCaCUCCGuCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 65357 0.66 0.842146
Target:  5'- -aGGUCgcgccaaaaguGGGcGuuGCAGGCCUCCUu -3'
miRNA:   3'- caUCAGau---------CCCaCucCGUCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 24740 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 27809 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.