miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 5' -58.3 NC_007605.1 + 141710 0.66 0.843741
Target:  5'- gGGGGUGCCggcuGCAgCCG-GGUC-Cg -3'
miRNA:   3'- gUCCCACGGaucuCGU-GGCuCCAGaG- -5'
33327 5' -58.3 NC_007605.1 + 75043 0.66 0.843741
Target:  5'- --cGGUGCCUGGGcGCaagagaucucgGCCGuuGUCUCa -3'
miRNA:   3'- gucCCACGGAUCU-CG-----------UGGCucCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 61467 0.66 0.835693
Target:  5'- gAGGG-GCCgcUGGuGCGCCG-GG-CUCg -3'
miRNA:   3'- gUCCCaCGG--AUCuCGUGGCuCCaGAG- -5'
33327 5' -58.3 NC_007605.1 + 126008 0.66 0.835693
Target:  5'- cCGGaGGUGuCCgUGGGGCACCagGAGcuGUCUCc -3'
miRNA:   3'- -GUC-CCAC-GG-AUCUCGUGG--CUC--CAGAG- -5'
33327 5' -58.3 NC_007605.1 + 65525 0.66 0.835693
Target:  5'- uCGGGGUGC--AGGGCcugGCCGAuGUCUUu -3'
miRNA:   3'- -GUCCCACGgaUCUCG---UGGCUcCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 116024 0.66 0.830777
Target:  5'- gAGGGgGCCUGGugccagacucucuucAGUgACCGgacGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGAUC---------------UCG-UGGC---UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 64848 0.66 0.819063
Target:  5'- --aGGUGCCUauAGAGgGCCuGGGUCa- -3'
miRNA:   3'- gucCCACGGA--UCUCgUGGcUCCAGag -5'
33327 5' -58.3 NC_007605.1 + 171599 0.67 0.7929
Target:  5'- gGGGGUGUUggcgGGGGCAUgGGGGggUCg -3'
miRNA:   3'- gUCCCACGGa---UCUCGUGgCUCCagAG- -5'
33327 5' -58.3 NC_007605.1 + 107370 0.67 0.7929
Target:  5'- uGGGGUGCCUugcccuGGAGaCGCU--GGUCUUc -3'
miRNA:   3'- gUCCCACGGA------UCUC-GUGGcuCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 53572 0.67 0.783886
Target:  5'- cCAGGG-GCCUGGcGC-UUGGGGcCUCg -3'
miRNA:   3'- -GUCCCaCGGAUCuCGuGGCUCCaGAG- -5'
33327 5' -58.3 NC_007605.1 + 48003 0.67 0.774739
Target:  5'- -cGGGccgugGCCaGGGGuUACCGAGGcCUCg -3'
miRNA:   3'- guCCCa----CGGaUCUC-GUGGCUCCaGAG- -5'
33327 5' -58.3 NC_007605.1 + 157368 0.67 0.765469
Target:  5'- cCGGGG-GCCguggGGGGCACCGGuguGGUg-- -3'
miRNA:   3'- -GUCCCaCGGa---UCUCGUGGCU---CCAgag -5'
33327 5' -58.3 NC_007605.1 + 25099 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 31236 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 28167 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 22030 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 12823 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 34305 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 18961 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 15892 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.