miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 60188 0.66 0.984937
Target:  5'- gCAGGGGCuCGCUG-GUGu--GGGCCc -3'
miRNA:   3'- gGUCCUUGuGCGACuCGCucuUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 98453 0.66 0.989569
Target:  5'- gCAGacAUugGCUGGGCGuGGuuuacuGACCa -3'
miRNA:   3'- gGUCcuUGugCGACUCGCuCUu-----CUGG- -5'
33351 3' -52.4 NC_007605.1 + 48814 0.66 0.989569
Target:  5'- gCCAGaGGCugGCUGAGCcaccGAGcGCCc -3'
miRNA:   3'- -GGUCcUUGugCGACUCGcu--CUUcUGG- -5'
33351 3' -52.4 NC_007605.1 + 17954 0.66 0.991869
Target:  5'- aCAGGAAcCugGggcuaguCUGGGUGGGAuuAGGCUg -3'
miRNA:   3'- gGUCCUU-GugC-------GACUCGCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 52870 0.66 0.988169
Target:  5'- gUAGGAgucggcggcgGCgGCGCUGGGCGGGcGGAa- -3'
miRNA:   3'- gGUCCU----------UG-UGCGACUCGCUCuUCUgg -5'
33351 3' -52.4 NC_007605.1 + 96529 0.66 0.991535
Target:  5'- gCAGGAGCAgGagguggaggccgGGGuCGAGGAGGCa -3'
miRNA:   3'- gGUCCUUGUgCga----------CUC-GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 165746 0.66 0.986628
Target:  5'- cCCGGGGACAC-CUGcaCGAGAccccuGGGCUc -3'
miRNA:   3'- -GGUCCUUGUGcGACucGCUCU-----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 67996 0.66 0.988169
Target:  5'- gCCAGcGACAgGCUGAGgaaCGAGcAGAUg -3'
miRNA:   3'- -GGUCcUUGUgCGACUC---GCUCuUCUGg -5'
33351 3' -52.4 NC_007605.1 + 80122 0.66 0.991978
Target:  5'- cCCAgccGGAucuCcCUGGGCGAGAAG-CCa -3'
miRNA:   3'- -GGU---CCUuguGcGACUCGCUCUUCuGG- -5'
33351 3' -52.4 NC_007605.1 + 136536 0.66 0.989569
Target:  5'- cCCAGGAGguuacUACGCcGGGCccgcgGGcGggGACCc -3'
miRNA:   3'- -GGUCCUU-----GUGCGaCUCG-----CU-CuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 37197 0.66 0.989569
Target:  5'- gCCGGGGACAgaGCaGGGgGAGggG-Ca -3'
miRNA:   3'- -GGUCCUUGUg-CGaCUCgCUCuuCuGg -5'
33351 3' -52.4 NC_007605.1 + 61446 0.66 0.984937
Target:  5'- gCGGGGGCG-GCggcGGGCGuAGAGGgGCCg -3'
miRNA:   3'- gGUCCUUGUgCGa--CUCGC-UCUUC-UGG- -5'
33351 3' -52.4 NC_007605.1 + 104008 0.66 0.991978
Target:  5'- -gGGGAAUAUGUUGAGguGGucGACCu -3'
miRNA:   3'- ggUCCUUGUGCGACUCgcUCuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 126887 0.66 0.984759
Target:  5'- aCCAGG-ACACGUUGAGaccguccCGGcAGGACa -3'
miRNA:   3'- -GGUCCuUGUGCGACUC-------GCUcUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 57391 0.66 0.988169
Target:  5'- gCAGGGGCugcUGCUGAGgaggaaGAGGAGAa- -3'
miRNA:   3'- gGUCCUUGu--GCGACUCg-----CUCUUCUgg -5'
33351 3' -52.4 NC_007605.1 + 153215 0.66 0.989569
Target:  5'- aCGGGAACGCcgugccGCUcGGCGu--AGGCCg -3'
miRNA:   3'- gGUCCUUGUG------CGAcUCGCucuUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 104157 0.66 0.988745
Target:  5'- cCCGGGAccuCAUGCaGAGCcucuuucugaccucgGGGAAGAUg -3'
miRNA:   3'- -GGUCCUu--GUGCGaCUCG---------------CUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 105528 0.66 0.984937
Target:  5'- -uGGGAACGC-CUGAugGCG-GAGGGCa -3'
miRNA:   3'- ggUCCUUGUGcGACU--CGCuCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 65562 0.66 0.984937
Target:  5'- uCCAGGuAGgGUGaCUGAGagucgaGGGAGGGCCa -3'
miRNA:   3'- -GGUCC-UUgUGC-GACUCg-----CUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 53872 0.66 0.991978
Target:  5'- aCAGGGGCu--UUGGGCGGGGAGGa- -3'
miRNA:   3'- gGUCCUUGugcGACUCGCUCUUCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.