miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 107592 1.15 0.003335
Target:  5'- gCCAGGAACACGCUGAGCGAGAAGACCa -3'
miRNA:   3'- -GGUCCUUGUGCGACUCGCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 165225 0.78 0.552895
Target:  5'- gCAGGAACAC-CUGAGCGugguGAAG-CCu -3'
miRNA:   3'- gGUCCUUGUGcGACUCGCu---CUUCuGG- -5'
33351 3' -52.4 NC_007605.1 + 95830 0.77 0.573139
Target:  5'- aCAGGAGCAggaGCagGAGCGGGAGGGgCa -3'
miRNA:   3'- gGUCCUUGUg--CGa-CUCGCUCUUCUgG- -5'
33351 3' -52.4 NC_007605.1 + 90529 0.76 0.655232
Target:  5'- cUCAGGAGCAgGCUGAGgGgcAGAAaACCa -3'
miRNA:   3'- -GGUCCUUGUgCGACUCgC--UCUUcUGG- -5'
33351 3' -52.4 NC_007605.1 + 134791 0.76 0.665495
Target:  5'- uCCAGGAucuccCGCGCcgcaagcaUGGGCGAGggGcGCCc -3'
miRNA:   3'- -GGUCCUu----GUGCG--------ACUCGCUCuuC-UGG- -5'
33351 3' -52.4 NC_007605.1 + 148955 0.75 0.682874
Target:  5'- gCAGGAAUGCGggGAGCGgcaagggcucaccaGGGAGGCCu -3'
miRNA:   3'- gGUCCUUGUGCgaCUCGC--------------UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 35517 0.75 0.706185
Target:  5'- cCCAGGAAUcaaaGCaGCuUGGGCGAGAggGGGCUg -3'
miRNA:   3'- -GGUCCUUG----UG-CG-ACUCGCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 143175 0.75 0.716221
Target:  5'- gCAGGGACcccGCGCcacccgcuucaUGGGgGGGGAGGCCg -3'
miRNA:   3'- gGUCCUUG---UGCG-----------ACUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 40360 0.75 0.716221
Target:  5'- gCAGGGACcccGCGCcacccgcuucaUGGGgGGGGAGGCCg -3'
miRNA:   3'- gGUCCUUG---UGCG-----------ACUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 48396 0.74 0.765128
Target:  5'- cCCGGGGAUcgagcuCGCUGGcGUGAGAcuGGGCCc -3'
miRNA:   3'- -GGUCCUUGu-----GCGACU-CGCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 35225 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 29088 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 32156 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 26019 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 22950 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 16812 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 13743 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 19881 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 47764 0.74 0.774588
Target:  5'- cCCGGGGGCcuugucCGCUGGGCcAGGucacAGACCa -3'
miRNA:   3'- -GGUCCUUGu-----GCGACUCGcUCU----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 40305 0.73 0.783919
Target:  5'- aCCAGGGGCcCgGCggGGGUGGGggGugCg -3'
miRNA:   3'- -GGUCCUUGuG-CGa-CUCGCUCuuCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.