miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 2018 0.7 0.909041
Target:  5'- gCAGGGugaacacuuggGCACGgaGAGUGcccuGGAGGCCu -3'
miRNA:   3'- gGUCCU-----------UGUGCgaCUCGCu---CUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 2333 0.68 0.968229
Target:  5'- gCCAGaGAC-CGCUGAcaCGAGGccGGACCu -3'
miRNA:   3'- -GGUCcUUGuGCGACUc-GCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 2791 0.68 0.961667
Target:  5'- aCAGGAccaucaacgcCACGCUcaaggGAG-GAGAGGGCCu -3'
miRNA:   3'- gGUCCUu---------GUGCGA-----CUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 3242 0.67 0.983088
Target:  5'- cCgGGGGGCGCGCguAGCccGAGAugcacgGGGCCg -3'
miRNA:   3'- -GgUCCUUGUGCGacUCG--CUCU------UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 3585 0.7 0.905337
Target:  5'- aCCGGGGACGCcaggucguugacaaaGUUGAGUccaccGAGggGAaCCg -3'
miRNA:   3'- -GGUCCUUGUG---------------CGACUCG-----CUCuuCU-GG- -5'
33351 3' -52.4 NC_007605.1 + 4519 0.72 0.828331
Target:  5'- -gAGGAGCGCaGCgUGGGUGAGGugcugcAGACCc -3'
miRNA:   3'- ggUCCUUGUG-CG-ACUCGCUCU------UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 10963 0.67 0.981073
Target:  5'- gCCGGGuGACugGUgggGGGCaucuGggGGCCc -3'
miRNA:   3'- -GGUCC-UUGugCGa--CUCGcu--CuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 12277 0.66 0.988169
Target:  5'- -gGGGGACGgGgaGGG-GGGGAGGCUg -3'
miRNA:   3'- ggUCCUUGUgCgaCUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 13056 0.7 0.920766
Target:  5'- aCCAGGAGgGCGcCUGgaGGCGGGcccgaGGGGCUc -3'
miRNA:   3'- -GGUCCUUgUGC-GAC--UCGCUC-----UUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 13194 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 13488 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 13743 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 13951 0.69 0.941318
Target:  5'- cCCGGGGGuCGgGCUGGGCcgccaGGggGGCa -3'
miRNA:   3'- -GGUCCUU-GUgCGACUCGc----UCuuCUGg -5'
33351 3' -52.4 NC_007605.1 + 14013 0.68 0.968229
Target:  5'- gCGGGAGgGgGCUGGGCcucacccucGggGACCc -3'
miRNA:   3'- gGUCCUUgUgCGACUCGcu-------CuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 15346 0.66 0.988169
Target:  5'- -gGGGGACGgGgaGGG-GGGGAGGCUg -3'
miRNA:   3'- ggUCCUUGUgCgaCUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 16125 0.7 0.920766
Target:  5'- aCCAGGAGgGCGcCUGgaGGCGGGcccgaGGGGCUc -3'
miRNA:   3'- -GGUCCUUgUGC-GAC--UCGCUC-----UUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 16263 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 16557 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 16812 0.74 0.765128
Target:  5'- cCCGGGAGC-CGUggacGGGCGuGGGAGGCUg -3'
miRNA:   3'- -GGUCCUUGuGCGa---CUCGC-UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 17020 0.69 0.941318
Target:  5'- cCCGGGGGuCGgGCUGGGCcgccaGGggGGCa -3'
miRNA:   3'- -GGUCCUU-GUgCGACUCGc----UCuuCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.