miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 45858 0.7 0.926266
Target:  5'- aCGGGGGCAU-CUGAGUGAuu-GACCa -3'
miRNA:   3'- gGUCCUUGUGcGACUCGCUcuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 63016 0.71 0.887622
Target:  5'- -gAGGAACACGCgcaggccuccucgcUGAGUGcGgcGGCCg -3'
miRNA:   3'- ggUCCUUGUGCG--------------ACUCGCuCuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 81024 0.71 0.889674
Target:  5'- -gAGG-ACACGgaGAGCGAuGGAGAUg -3'
miRNA:   3'- ggUCCuUGUGCgaCUCGCU-CUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 61011 0.71 0.889674
Target:  5'- gCCAGaGAGCGgGUuuUGGGCagcucguugGAGAGGACCc -3'
miRNA:   3'- -GGUC-CUUGUgCG--ACUCG---------CUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 54399 0.71 0.896364
Target:  5'- uCCGGGGACugcagggccugGCGCgucuGCGcGAGGGCCg -3'
miRNA:   3'- -GGUCCUUG-----------UGCGacu-CGCuCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 81658 0.71 0.898975
Target:  5'- cCgGGGAaacuucuggcauuagACGCGCgcggGAGCGuuGGAGGCCc -3'
miRNA:   3'- -GgUCCU---------------UGUGCGa---CUCGCu-CUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 137627 0.7 0.9072
Target:  5'- gCUGGGAuaacaguaagaugcAUACGCUGAGUGAG-GGuCCg -3'
miRNA:   3'- -GGUCCU--------------UGUGCGACUCGCUCuUCuGG- -5'
33351 3' -52.4 NC_007605.1 + 2018 0.7 0.909041
Target:  5'- gCAGGGugaacacuuggGCACGgaGAGUGcccuGGAGGCCu -3'
miRNA:   3'- gGUCCU-----------UGUGCgaCUCGCu---CUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 162890 0.7 0.920766
Target:  5'- aUAGcGGGCAagaagGUUGGGCGAGAaggAGGCCg -3'
miRNA:   3'- gGUC-CUUGUg----CGACUCGCUCU---UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 153934 0.71 0.882755
Target:  5'- gCCAGGGccuGCAgGUUG-GCGGGGcucaGGGCCu -3'
miRNA:   3'- -GGUCCU---UGUgCGACuCGCUCU----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 151041 0.71 0.882755
Target:  5'- gCCAGGGAgaGCGaugUGGGCGAGGauGGGCUc -3'
miRNA:   3'- -GGUCCUUg-UGCg--ACUCGCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 133107 0.72 0.85288
Target:  5'- gCucGAGCugGCaGAGCG-GGAGGCCg -3'
miRNA:   3'- gGucCUUGugCGaCUCGCuCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 95830 0.77 0.573139
Target:  5'- aCAGGAGCAggaGCagGAGCGGGAGGGgCa -3'
miRNA:   3'- gGUCCUUGUg--CGa-CUCGCUCUUCUgG- -5'
33351 3' -52.4 NC_007605.1 + 90529 0.76 0.655232
Target:  5'- cUCAGGAGCAgGCUGAGgGgcAGAAaACCa -3'
miRNA:   3'- -GGUCCUUGUgCGACUCgC--UCUUcUGG- -5'
33351 3' -52.4 NC_007605.1 + 40360 0.75 0.716221
Target:  5'- gCAGGGACcccGCGCcacccgcuucaUGGGgGGGGAGGCCg -3'
miRNA:   3'- gGUCCUUG---UGCG-----------ACUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 143175 0.75 0.716221
Target:  5'- gCAGGGACcccGCGCcacccgcuucaUGGGgGGGGAGGCCg -3'
miRNA:   3'- gGUCCUUG---UGCG-----------ACUCgCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 47764 0.74 0.774588
Target:  5'- cCCGGGGGCcuugucCGCUGGGCcAGGucacAGACCa -3'
miRNA:   3'- -GGUCCUUGu-----GCGACUCGcUCU----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 40305 0.73 0.783919
Target:  5'- aCCAGGGGCcCgGCggGGGUGGGggGugCg -3'
miRNA:   3'- -GGUCCUUGuG-CGa-CUCGCUCuuCugG- -5'
33351 3' -52.4 NC_007605.1 + 57350 0.73 0.819777
Target:  5'- -uGGGAGC-UGCUGAGCagGAGGAGgaGCCg -3'
miRNA:   3'- ggUCCUUGuGCGACUCG--CUCUUC--UGG- -5'
33351 3' -52.4 NC_007605.1 + 4519 0.72 0.828331
Target:  5'- -gAGGAGCGCaGCgUGGGUGAGGugcugcAGACCc -3'
miRNA:   3'- ggUCCUUGUG-CG-ACUCGCUCU------UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.