Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33397 | 5' | -54.3 | NC_007605.1 | + | 47750 | 0.66 | 0.969485 |
Target: 5'- --cGGAGG-UGGAGA-GGCCcGGGGGCc -3' miRNA: 3'- gcuCUUUCuGCCUCUaCCGG-CUCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 155338 | 0.66 | 0.959655 |
Target: 5'- aCGAGucccggugcuGGAGGCgGGGGAUGGCgCGGcGGCa -3' miRNA: 3'- -GCUC----------UUUCUG-CCUCUACCG-GCUcCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 31954 | 0.66 | 0.969485 |
Target: 5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3' miRNA: 3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 48017 | 0.66 | 0.955943 |
Target: 5'- -aAGAGGGACGGgccaAGAUggGGCgCGAGGGu -3' miRNA: 3'- gcUCUUUCUGCC----UCUA--CCG-GCUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 144609 | 0.66 | 0.969485 |
Target: 5'- ----cAAGGCGGGGGUugGGCCcAGGGCc -3' miRNA: 3'- gcucuUUCUGCCUCUA--CCGGcUCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 74997 | 0.66 | 0.969485 |
Target: 5'- uGAuGGAGAUGGAGAaggUGGCCacggcgcucaaGAuGGACg -3' miRNA: 3'- gCUcUUUCUGCCUCU---ACCGG-----------CU-CCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 170175 | 0.66 | 0.959655 |
Target: 5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3' miRNA: 3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 169638 | 0.66 | 0.955943 |
Target: 5'- uCGGGggGGuCGGGGGgcGCCGccGGGCg -3' miRNA: 3'- -GCUCuuUCuGCCUCUacCGGCu-CCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 170697 | 0.66 | 0.959655 |
Target: 5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3' miRNA: 3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 28885 | 0.66 | 0.969485 |
Target: 5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3' miRNA: 3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 13540 | 0.66 | 0.969485 |
Target: 5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3' miRNA: 3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 171235 | 0.66 | 0.959655 |
Target: 5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3' miRNA: 3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 105541 | 0.66 | 0.963146 |
Target: 5'- aGGGGcgcccccGugGGAacgccuGAUGGCgGAGGGCa -3' miRNA: 3'- gCUCUuu-----CugCCU------CUACCGgCUCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 100104 | 0.66 | 0.959655 |
Target: 5'- aGAGggGGGCaGAauuugcGGCCGGGGGa -3' miRNA: 3'- gCUCuuUCUGcCUcua---CCGGCUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 61077 | 0.66 | 0.969485 |
Target: 5'- uCGAuGAAGGCGGccgggaAGAaggGGCUGuGGACa -3' miRNA: 3'- -GCUcUUUCUGCC------UCUa--CCGGCuCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 35023 | 0.66 | 0.969485 |
Target: 5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3' miRNA: 3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 138135 | 0.66 | 0.966421 |
Target: 5'- uGAGucGGucucuCGGAucGAguugGGCCGGGGAUa -3' miRNA: 3'- gCUCuuUCu----GCCU--CUa---CCGGCUCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 161110 | 0.66 | 0.966421 |
Target: 5'- gGAGGGAG-UGuGGGGUgGGCCcGGGGCa -3' miRNA: 3'- gCUCUUUCuGC-CUCUA-CCGGcUCCUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 120096 | 0.66 | 0.966421 |
Target: 5'- gGAGGAAGAUGGc-GUGGUccaCGAGcGGCg -3' miRNA: 3'- gCUCUUUCUGCCucUACCG---GCUC-CUG- -5' |
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33397 | 5' | -54.3 | NC_007605.1 | + | 57725 | 0.66 | 0.959655 |
Target: 5'- uGAGAcuGGCGcGGGGUGGggugUCGGGGAg -3' miRNA: 3'- gCUCUuuCUGC-CUCUACC----GGCUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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