miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 5' -54.3 NC_007605.1 + 153444 1.09 0.00506
Target:  5'- gCGAGAAAGACGGAGAUGGCCGAGGACc -3'
miRNA:   3'- -GCUCUUUCUGCCUCUACCGGCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 55742 0.81 0.279938
Target:  5'- gCGGGAGAGAUGGGGGcgccuggGGCCGAGGcCa -3'
miRNA:   3'- -GCUCUUUCUGCCUCUa------CCGGCUCCuG- -5'
33397 5' -54.3 NC_007605.1 + 35294 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 32225 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 26088 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 29156 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 23019 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 19950 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 16881 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 13812 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 30520 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 33589 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 18244 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 24382 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 21313 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 27451 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 15175 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 115414 0.76 0.510977
Target:  5'- uGGGGAAGGCGGcGGA-GGCCGAgcagGGACu -3'
miRNA:   3'- gCUCUUUCUGCC-UCUaCCGGCU----CCUG- -5'
33397 5' -54.3 NC_007605.1 + 125065 0.76 0.530576
Target:  5'- aGAGGGAGAUGGGGGgaGGUcuCGAGGGCu -3'
miRNA:   3'- gCUCUUUCUGCCUCUa-CCG--GCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 136753 0.74 0.600974
Target:  5'- cCGAGGAGGAUGaAGAaGGCgGGGGGCu -3'
miRNA:   3'- -GCUCUUUCUGCcUCUaCCGgCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.