miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 5' -54.3 NC_007605.1 + 64714 0.7 0.833125
Target:  5'- aGGGGu-GACGGGGGcUGGCC-AGGAUg -3'
miRNA:   3'- gCUCUuuCUGCCUCU-ACCGGcUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 104189 0.72 0.761514
Target:  5'- uCGGGGAAGAUGGGGugccUGGCC-AGGuCa -3'
miRNA:   3'- -GCUCUUUCUGCCUCu---ACCGGcUCCuG- -5'
33397 5' -54.3 NC_007605.1 + 50324 0.71 0.770021
Target:  5'- gGAGAGAcacgcgcGGCGGAGAUGcaGCCGAcGGCg -3'
miRNA:   3'- gCUCUUU-------CUGCCUCUAC--CGGCUcCUG- -5'
33397 5' -54.3 NC_007605.1 + 54813 0.71 0.780282
Target:  5'- uCGGGcGAAGugGGAGcgGGCUcuGGGCg -3'
miRNA:   3'- -GCUC-UUUCugCCUCuaCCGGcuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 52085 0.71 0.798519
Target:  5'- cCGuAGGAAGACGGGGuuucGCgGGGGACc -3'
miRNA:   3'- -GC-UCUUUCUGCCUCuac-CGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 57456 0.7 0.816156
Target:  5'- uGAGGAAGAagUGGAGAagGaGCCG-GGGCg -3'
miRNA:   3'- gCUCUUUCU--GCCUCUa-C-CGGCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 57507 0.7 0.816156
Target:  5'- uGAGGAAGAagUGGAGAagGaGCCG-GGGCg -3'
miRNA:   3'- gCUCUUUCU--GCCUCUa-C-CGGCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 170656 0.7 0.816156
Target:  5'- cCGGGGcugcGGGCGGuGGAUGGCgGcGGACg -3'
miRNA:   3'- -GCUCUu---UCUGCC-UCUACCGgCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 136300 0.7 0.824728
Target:  5'- gGAGAAGGagcaacagccuGCGGAGGUucGGCCGccgcgggccAGGACc -3'
miRNA:   3'- gCUCUUUC-----------UGCCUCUA--CCGGC---------UCCUG- -5'
33397 5' -54.3 NC_007605.1 + 58040 0.72 0.742288
Target:  5'- aGGGGAGGGCuGGAGGccggGGCCGcGGAg -3'
miRNA:   3'- gCUCUUUCUG-CCUCUa---CCGGCuCCUg -5'
33397 5' -54.3 NC_007605.1 + 50678 0.72 0.732526
Target:  5'- cCGuGGGGAGGCGGG--UGGCgGAGGGCc -3'
miRNA:   3'- -GC-UCUUUCUGCCUcuACCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 171193 0.72 0.722678
Target:  5'- cCGGGGGcugcGGGCGGuGGAUGGCgGcGGACg -3'
miRNA:   3'- -GCUCUU----UCUGCC-UCUACCGgCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 125065 0.76 0.530576
Target:  5'- aGAGGGAGAUGGGGGgaGGUcuCGAGGGCu -3'
miRNA:   3'- gCUCUUUCUGCCUCUa-CCG--GCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 136753 0.74 0.600974
Target:  5'- cCGAGGAGGAUGaAGAaGGCgGGGGGCu -3'
miRNA:   3'- -GCUCUUUCUGCcUCUaCCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 61249 0.74 0.631622
Target:  5'- aGGGGAGGGcCGGAGccggGGCCGGGGcCu -3'
miRNA:   3'- gCUCUUUCU-GCCUCua--CCGGCUCCuG- -5'
33397 5' -54.3 NC_007605.1 + 48427 0.74 0.641849
Target:  5'- gGAGAAAGACGGGcGggGGCguaGGGGAg -3'
miRNA:   3'- gCUCUUUCUGCCU-CuaCCGg--CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 95684 0.72 0.712751
Target:  5'- gGAcGAGGACGGGGAagaGGaCGAGGACg -3'
miRNA:   3'- gCUcUUUCUGCCUCUa--CCgGCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 96579 0.72 0.722678
Target:  5'- uCGAGGAGGuagUGGAGGccggGGUCGAGGAg -3'
miRNA:   3'- -GCUCUUUCu--GCCUCUa---CCGGCUCCUg -5'
33397 5' -54.3 NC_007605.1 + 169596 0.72 0.722678
Target:  5'- cCGGGGGcugcGGGCGGuGGAUGGCgGcGGACg -3'
miRNA:   3'- -GCUCUU----UCUGCC-UCUACCGgCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 170133 0.72 0.722678
Target:  5'- cCGGGGGcugcGGGCGGuGGAUGGCgGcGGACg -3'
miRNA:   3'- -GCUCUU----UCUGCC-UCUACCGgCuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.