miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 5' -54.3 NC_007605.1 + 3620 0.7 0.836434
Target:  5'- aGGGAGAGAaaucauccaucaucuCGGcGGUGGaaaCCGGGGACg -3'
miRNA:   3'- gCUCUUUCU---------------GCCuCUACC---GGCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 5122 0.67 0.942984
Target:  5'- uGGGGGAGcUGGGGGugcaaguuuuggcUGGCCuGGGGGCc -3'
miRNA:   3'- gCUCUUUCuGCCUCU-------------ACCGG-CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 5935 0.67 0.947837
Target:  5'- uGAGGAGGGCuGGGcccggGGCUagGGGGACa -3'
miRNA:   3'- gCUCUUUCUGcCUCua---CCGG--CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 6100 0.67 0.938802
Target:  5'- aCGAgGAGAGAUgaGGuGAgGGCaGAGGACa -3'
miRNA:   3'- -GCU-CUUUCUG--CCuCUaCCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 12264 0.73 0.692702
Target:  5'- gGGGGGAGGCuGGGGUGGCaggaGGGGAg -3'
miRNA:   3'- gCUCUUUCUGcCUCUACCGg---CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 12407 0.69 0.864818
Target:  5'- cCGAGGAGGcgccCGGAGuggGGCCGGucggcuGGGCu -3'
miRNA:   3'- -GCUCUUUCu---GCCUCua-CCGGCU------CCUG- -5'
33397 5' -54.3 NC_007605.1 + 13409 0.67 0.947837
Target:  5'- aGcAGggGGACaGAGAgaagGGCCGGuGGGg -3'
miRNA:   3'- gC-UCuuUCUGcCUCUa---CCGGCU-CCUg -5'
33397 5' -54.3 NC_007605.1 + 13540 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 13812 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 14621 0.69 0.879434
Target:  5'- cCGAGuccu-UGGAGggGGCgGAGGGCu -3'
miRNA:   3'- -GCUCuuucuGCCUCuaCCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 15175 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 15333 0.73 0.692702
Target:  5'- gGGGGGAGGCuGGGGUGGCaggaGGGGAg -3'
miRNA:   3'- gCUCUUUCUGcCUCUACCGg---CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 15476 0.69 0.864818
Target:  5'- cCGAGGAGGcgccCGGAGuggGGCCGGucggcuGGGCu -3'
miRNA:   3'- -GCUCUUUCu---GCCUCua-CCGGCU------CCUG- -5'
33397 5' -54.3 NC_007605.1 + 16478 0.67 0.947837
Target:  5'- aGcAGggGGACaGAGAgaagGGCCGGuGGGg -3'
miRNA:   3'- gC-UCuuUCUGcCUCUa---CCGGCU-CCUg -5'
33397 5' -54.3 NC_007605.1 + 16609 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 16881 0.81 0.286575
Target:  5'- -cAGggGGGCGGGGAUGGCCcggguggacaGAGGGCc -3'
miRNA:   3'- gcUCuuUCUGCCUCUACCGG----------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 17690 0.69 0.879434
Target:  5'- cCGAGuccu-UGGAGggGGCgGAGGGCu -3'
miRNA:   3'- -GCUCuuucuGCCUCuaCCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 18244 0.78 0.41825
Target:  5'- gGAGGAcggGGACGGAGggGGCCugaagcccGGGGACu -3'
miRNA:   3'- gCUCUU---UCUGCCUCuaCCGG--------CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 18402 0.73 0.692702
Target:  5'- gGGGGGAGGCuGGGGUGGCaggaGGGGAg -3'
miRNA:   3'- gCUCUUUCUGcCUCUACCGg---CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 18545 0.69 0.864818
Target:  5'- cCGAGGAGGcgccCGGAGuggGGCCGGucggcuGGGCu -3'
miRNA:   3'- -GCUCUUUCu---GCCUCua-CCGGCU------CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.