miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 163540 0.66 0.940668
Target:  5'- -aCUGGCGGagcuggggcaCGCCCucuGGGAAcACc -3'
miRNA:   3'- agGACCGCCg---------GCGGGuuuUCCUUuUG- -5'
33399 3' -54.6 NC_007605.1 + 22603 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 50799 0.66 0.945261
Target:  5'- gUCCUGG-GGCUggaGCCCAAAAGu----- -3'
miRNA:   3'- -AGGACCgCCGG---CGGGUUUUCcuuuug -5'
33399 3' -54.6 NC_007605.1 + 150465 0.66 0.935833
Target:  5'- ---gGGCGuGCCGCCCu---GGAGAu- -3'
miRNA:   3'- aggaCCGC-CGGCGGGuuuuCCUUUug -5'
33399 3' -54.6 NC_007605.1 + 19534 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 4891 0.66 0.940668
Target:  5'- cUCCUGGCGGCCuuCaCGAAugccGGAu--- -3'
miRNA:   3'- -AGGACCGCCGGcgG-GUUUu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 98844 0.66 0.940668
Target:  5'- cUCUGGggucucaGGCCuCCCAGucuauccagGAGGAGGACg -3'
miRNA:   3'- aGGACCg------CCGGcGGGUU---------UUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 104205 0.66 0.95373
Target:  5'- gCCUGGCcaGGUCaCCCA--AGGAuuACu -3'
miRNA:   3'- aGGACCG--CCGGcGGGUuuUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 53502 0.66 0.949614
Target:  5'- cUCCUGGaugauGGCC-UCCAGucGGGAGAg -3'
miRNA:   3'- -AGGACCg----CCGGcGGGUUuuCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 31810 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 28741 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 49882 0.66 0.949614
Target:  5'- uUCCggGGCGGCgGUggaUGAGAGGAGGGg -3'
miRNA:   3'- -AGGa-CCGCCGgCGg--GUUUUCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 16465 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 13396 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 82570 0.66 0.940668
Target:  5'- cCCcGaGUGGCCuGUUCAAGAGGAGggUg -3'
miRNA:   3'- aGGaC-CGCCGG-CGGGUUUUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 83251 0.66 0.95373
Target:  5'- cUCCUGGUaucccuGGUauggaGCCUggGGGGGcgGCg -3'
miRNA:   3'- -AGGACCG------CCGg----CGGGuuUUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 38911 0.66 0.945261
Target:  5'- cUCCgggggcagcgGGCGGCCGCCgGu-GGGuccGCu -3'
miRNA:   3'- -AGGa---------CCGCCGGCGGgUuuUCCuuuUG- -5'
33399 3' -54.6 NC_007605.1 + 25672 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 134522 0.66 0.942534
Target:  5'- -gCUGGCGGCgCGCacaCAGcugcgucuagccuucGAGGAcgGCg -3'
miRNA:   3'- agGACCGCCG-GCGg--GUU---------------UUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 112023 0.66 0.949614
Target:  5'- aCCUGG-GGCCGUagAAGAGGGc--- -3'
miRNA:   3'- aGGACCgCCGGCGggUUUUCCUuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.