miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 4129 0.68 0.874194
Target:  5'- aCCgUGGUGGCCucugucuccGCCCcAGGGGAAuuCu -3'
miRNA:   3'- aGG-ACCGCCGG---------CGGGuUUUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 4891 0.66 0.940668
Target:  5'- cUCCUGGCGGCCuuCaCGAAugccGGAu--- -3'
miRNA:   3'- -AGGACCGCCGGcgG-GUUUu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 6714 0.71 0.730374
Target:  5'- gCCUGGcCGGCgGCCacacaggaggccaaCAGGAGGAgcuGAGCg -3'
miRNA:   3'- aGGACC-GCCGgCGG--------------GUUUUCCU---UUUG- -5'
33399 3' -54.6 NC_007605.1 + 10701 0.69 0.834878
Target:  5'- gCCgGGCGGCuCGgCUA--AGGAGGGCg -3'
miRNA:   3'- aGGaCCGCCG-GCgGGUuuUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 10799 0.67 0.919867
Target:  5'- gCCgGGCuGCUGCUgGguGGAGGAGGGCa -3'
miRNA:   3'- aGGaCCGcCGGCGGgU--UUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 11255 0.8 0.283359
Target:  5'- aCCaauUGGCGGCC-CCUAAGGGGggGACu -3'
miRNA:   3'- aGG---ACCGCCGGcGGGUUUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 11604 0.71 0.733352
Target:  5'- gCgaGGCcgGGCgGCCC-AGAGGAGGGCg -3'
miRNA:   3'- aGgaCCG--CCGgCGGGuUUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 11642 0.66 0.949189
Target:  5'- cCCggGGCGGCCGgaggCAGAGGGGgcgaccaGAGCg -3'
miRNA:   3'- aGGa-CCGCCGGCgg--GUUUUCCU-------UUUG- -5'
33399 3' -54.6 NC_007605.1 + 11750 0.68 0.884243
Target:  5'- cUCUGGCGGCCauGCUaucggugcaacggggCAGGGGGAGggUg -3'
miRNA:   3'- aGGACCGCCGG--CGG---------------GUUUUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 13396 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 13754 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 15728 0.67 0.901068
Target:  5'- aUgUGGUGGCgccagcgUGCCCAAGAGGGcacGGCa -3'
miRNA:   3'- aGgACCGCCG-------GCGGGUUUUCCUu--UUG- -5'
33399 3' -54.6 NC_007605.1 + 16465 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 16823 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 18055 0.7 0.781596
Target:  5'- -gCUGGCGGauGCCCGgguAAAGGAGGc- -3'
miRNA:   3'- agGACCGCCggCGGGU---UUUCCUUUug -5'
33399 3' -54.6 NC_007605.1 + 19534 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 19892 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 21011 0.71 0.733352
Target:  5'- -gCUGGagcccgGGCCGCCCAccgcccGGGAGGGCu -3'
miRNA:   3'- agGACCg-----CCGGCGGGUuu----UCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 21171 0.7 0.772183
Target:  5'- cUCCagGGCGGCaCGCCCucucucuGGGGGuuuACa -3'
miRNA:   3'- -AGGa-CCGCCG-GCGGGuu-----UUCCUuu-UG- -5'
33399 3' -54.6 NC_007605.1 + 22603 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.