miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 154685 1.1 0.003493
Target:  5'- cUCCUGGCGGCCGCCCAAAAGGAAAACu -3'
miRNA:   3'- -AGGACCGCCGGCGGGUUUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 154491 0.81 0.239394
Target:  5'- uUCCUuuugGGCGGCCGCCaggaGGcAGGAGAACa -3'
miRNA:   3'- -AGGA----CCGCCGGCGGg---UUuUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 11255 0.8 0.283359
Target:  5'- aCCaauUGGCGGCC-CCUAAGGGGggGACu -3'
miRNA:   3'- aGG---ACCGCCGGcGGGUUUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 62621 0.77 0.40177
Target:  5'- cCCUGGCGGCCGCgUAccggcgcaucaucgaAGAGGgcAGCg -3'
miRNA:   3'- aGGACCGCCGGCGgGU---------------UUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 60434 0.76 0.442749
Target:  5'- cUCCUGGU-GCCgGCCCucAGGGAGAGCc -3'
miRNA:   3'- -AGGACCGcCGG-CGGGuuUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 56527 0.76 0.461288
Target:  5'- cCCUGGCggaGGCCGCCCGAAcGGccguGGCc -3'
miRNA:   3'- aGGACCG---CCGGCGGGUUUuCCuu--UUG- -5'
33399 3' -54.6 NC_007605.1 + 62577 0.76 0.470709
Target:  5'- gCCUGGaaaaggaGGCCGCCCGGAguAGGuaguAGGCg -3'
miRNA:   3'- aGGACCg------CCGGCGGGUUU--UCCu---UUUG- -5'
33399 3' -54.6 NC_007605.1 + 59488 0.76 0.480228
Target:  5'- ---cGGCGGCgGCCCAgacAGAGGAGAGg -3'
miRNA:   3'- aggaCCGCCGgCGGGU---UUUCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 151288 0.76 0.489839
Target:  5'- -gCU-GCGGCCGCCCAGGGGGGcAAAUu -3'
miRNA:   3'- agGAcCGCCGGCGGGUUUUCCU-UUUG- -5'
33399 3' -54.6 NC_007605.1 + 57024 0.75 0.509324
Target:  5'- cUCCUGGCGG-UGUCCAGugugauGGggGACg -3'
miRNA:   3'- -AGGACCGCCgGCGGGUUuu----CCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 115860 0.75 0.523155
Target:  5'- uUCCacGUGGCCGCCCuucgauuuuacgauGAAGGAGGGCu -3'
miRNA:   3'- -AGGacCGCCGGCGGGu-------------UUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 68628 0.75 0.539134
Target:  5'- -aCUGGCGGCCGCCUcuuc-GGAGGCg -3'
miRNA:   3'- agGACCGCCGGCGGGuuuucCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 62527 0.73 0.610621
Target:  5'- cCCggaugGGCGGuuGCCCucGGAGGguGACu -3'
miRNA:   3'- aGGa----CCGCCggCGGGu-UUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 101033 0.73 0.610621
Target:  5'- cCCUGG-GGuuGCCCAccAGGAAggUg -3'
miRNA:   3'- aGGACCgCCggCGGGUuuUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 76495 0.73 0.620957
Target:  5'- aCCUGGaGGCCGCU----GGGGAAGCg -3'
miRNA:   3'- aGGACCgCCGGCGGguuuUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 132716 0.73 0.620957
Target:  5'- aCC-GGCGGCCGCCCGGcugccccGGAGcGCc -3'
miRNA:   3'- aGGaCCGCCGGCGGGUUuu-----CCUUuUG- -5'
33399 3' -54.6 NC_007605.1 + 132144 0.73 0.628198
Target:  5'- aCCUGGCGGCggcgcagcggUGCCCAGcGGGGccaccccccacccgGAGCg -3'
miRNA:   3'- aGGACCGCCG----------GCGGGUUuUCCU--------------UUUG- -5'
33399 3' -54.6 NC_007605.1 + 132019 0.73 0.628198
Target:  5'- aCCUGGCGGCggcgcagcggUGCCCAGcGGGGccaccccccacccgGAGCg -3'
miRNA:   3'- aGGACCGCCG----------GCGGGUUuUCCU--------------UUUG- -5'
33399 3' -54.6 NC_007605.1 + 132269 0.73 0.628198
Target:  5'- aCCUGGCGGCggcgcagcggUGCCCAGcGGGGccaccccccacccgGAGCg -3'
miRNA:   3'- aGGACCGCCG----------GCGGGUUuUCCU--------------UUUG- -5'
33399 3' -54.6 NC_007605.1 + 131894 0.73 0.628198
Target:  5'- aCCUGGCGGCggcgcagcggUGCCCAGcGGGGccaccccccacccgGAGCg -3'
miRNA:   3'- aGGACCGCCG----------GCGGGUUuUCCU--------------UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.