miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 50557 0.7 0.781596
Target:  5'- cCCagGGCGGgUGCCUggGggauGGGAAAGCc -3'
miRNA:   3'- aGGa-CCGCCgGCGGGuuU----UCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 29098 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 32167 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 35236 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 126106 0.72 0.703253
Target:  5'- -aCUGGUGGCCcuCCUgcGAAGGGAAGAUg -3'
miRNA:   3'- agGACCGCCGGc-GGG--UUUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 102843 0.71 0.710335
Target:  5'- aCCUGGUGGaCCGCaaccgucuauuuggCCAGcccGGGGAGACa -3'
miRNA:   3'- aGGACCGCC-GGCG--------------GGUUu--UCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 53827 0.71 0.720393
Target:  5'- uUCCcGGCcGCUGCCCGGgccagggcggccucGAGGGGAGCc -3'
miRNA:   3'- -AGGaCCGcCGGCGGGUU--------------UUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 53786 0.7 0.772183
Target:  5'- aCUUGGCGGCUGCCa---GGGAu--- -3'
miRNA:   3'- aGGACCGCCGGCGGguuuUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 63088 0.7 0.781596
Target:  5'- --gUGGCGGUCGCCgGggguggcaguggAGGGGGGAGCu -3'
miRNA:   3'- aggACCGCCGGCGGgU------------UUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 26029 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 22960 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 19892 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 11255 0.8 0.283359
Target:  5'- aCCaauUGGCGGCC-CCUAAGGGGggGACu -3'
miRNA:   3'- aGG---ACCGCCGGcGGGUUUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 62577 0.76 0.470709
Target:  5'- gCCUGGaaaaggaGGCCGCCCGGAguAGGuaguAGGCg -3'
miRNA:   3'- aGGACCg------CCGGCGGGUUU--UCCu---UUUG- -5'
33399 3' -54.6 NC_007605.1 + 57024 0.75 0.509324
Target:  5'- cUCCUGGCGG-UGUCCAGugugauGGggGACg -3'
miRNA:   3'- -AGGACCGCCgGCGGGUUuu----CCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 101033 0.73 0.610621
Target:  5'- cCCUGG-GGuuGCCCAccAGGAAggUg -3'
miRNA:   3'- aGGACCgCCggCGGGUuuUCCUUuuG- -5'
33399 3' -54.6 NC_007605.1 + 80035 0.73 0.631301
Target:  5'- aCCUGGa-GCCgGCCCAGAAGGGu-ACg -3'
miRNA:   3'- aGGACCgcCGG-CGGGUUUUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 57239 0.72 0.672602
Target:  5'- aUCCccaaaggagGGCuGCUGCCCGAAGGGAGGu- -3'
miRNA:   3'- -AGGa--------CCGcCGGCGGGUUUUCCUUUug -5'
33399 3' -54.6 NC_007605.1 + 13754 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5'
33399 3' -54.6 NC_007605.1 + 16823 0.72 0.682865
Target:  5'- cCCUGGCGGCCcaGCCCGAcccccGGGc--- -3'
miRNA:   3'- aGGACCGCCGG--CGGGUUuu---CCUuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.