miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 171325 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 170788 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 170265 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 169728 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 163001 0.66 0.758122
Target:  5'- -gGGCagcuacgUGGCgGGGGCGGCcGCCAg -3'
miRNA:   3'- agCCGgag----ACUGgCCCUGCCGaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 162242 0.74 0.298463
Target:  5'- gCGGCC-CUGcaggGCCGGGuguacggccgGCGGCUGCCu -3'
miRNA:   3'- aGCCGGaGAC----UGGCCC----------UGCCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 161033 0.7 0.498744
Target:  5'- -aGGCCUC-GGCCGGG-CuGCUGCUg -3'
miRNA:   3'- agCCGGAGaCUGGCCCuGcCGAUGGu -5'
33399 5' -60.7 NC_007605.1 + 154641 1.08 0.001454
Target:  5'- cUCGGCCUCUGACCGGGACGGCUACCAg -3'
miRNA:   3'- -AGCCGGAGACUGGCCCUGCCGAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 151405 0.67 0.67253
Target:  5'- -gGGCCUCguaGGCCGaGACGgGCaGCCGg -3'
miRNA:   3'- agCCGGAGa--CUGGCcCUGC-CGaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 150945 0.73 0.362041
Target:  5'- gCGGCCUC-GGCUGGGAcacgggacgugguCGGCUggcACCAg -3'
miRNA:   3'- aGCCGGAGaCUGGCCCU-------------GCCGA---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 136405 0.67 0.682266
Target:  5'- cCGGCUUUUGuagguCCGGGGCGucGCUgGCCu -3'
miRNA:   3'- aGCCGGAGACu----GGCCCUGC--CGA-UGGu -5'
33399 5' -60.7 NC_007605.1 + 135401 0.74 0.325917
Target:  5'- -gGGCC-CUGGcCCGGGugGGCUucCCGg -3'
miRNA:   3'- agCCGGaGACU-GGCCCugCCGAu-GGU- -5'
33399 5' -60.7 NC_007605.1 + 135195 0.68 0.623542
Target:  5'- -gGGCCUCUG-CCGGGAagcccaccCGG--GCCAg -3'
miRNA:   3'- agCCGGAGACuGGCCCU--------GCCgaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 133983 0.76 0.249003
Target:  5'- aCGGCCgcgCUGAacgugcCCGGGGCGGCgggucgggACCGg -3'
miRNA:   3'- aGCCGGa--GACU------GGCCCUGCCGa-------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 119758 0.67 0.691965
Target:  5'- cUCGGCUcagguUCcGGCCcuGGGACGGCagcaGCCGc -3'
miRNA:   3'- -AGCCGG-----AGaCUGG--CCCUGCCGa---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 118741 0.67 0.666673
Target:  5'- aCGGCCUC-GGCgGGGAacgugacaggcacaaCGGCUgugacuacACCAu -3'
miRNA:   3'- aGCCGGAGaCUGgCCCU---------------GCCGA--------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 103942 0.72 0.410757
Target:  5'- -aGGCCUCUG-CCGGGAgGuGCUgggucGCCu -3'
miRNA:   3'- agCCGGAGACuGGCCCUgC-CGA-----UGGu -5'
33399 5' -60.7 NC_007605.1 + 99371 0.69 0.565015
Target:  5'- -aGGCCcgucccCUGACCGGcGCGGgaGCCGg -3'
miRNA:   3'- agCCGGa-----GACUGGCCcUGCCgaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 85439 0.73 0.347709
Target:  5'- -aGGCCUCUG-CCGGGgaacggGCGGC-ACCu -3'
miRNA:   3'- agCCGGAGACuGGCCC------UGCCGaUGGu -5'
33399 5' -60.7 NC_007605.1 + 85379 0.71 0.471397
Target:  5'- -aGGCCUCUG-CCGGGgaACGGgUGgCAc -3'
miRNA:   3'- agCCGGAGACuGGCCC--UGCCgAUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.