Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33417 | 3' | -55.8 | NC_007605.1 | + | 133071 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132572 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132447 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132322 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132197 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132821 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 121384 | 0.66 | 0.912058 |
Target: 5'- cCGGCUCGGAgCCU-GGCgCGCgGCccgagGUGCg -3' miRNA: 3'- -GUUGAGCCU-GGAgUCG-GCGaCG-----UACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 131947 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132697 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 133196 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 133321 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 117483 | 0.66 | 0.922923 |
Target: 5'- gGACUCGGcgcucugGCCUaagaagcccCAGCUGCUGaCAagGCg -3' miRNA: 3'- gUUGAGCC-------UGGA---------GUCGGCGAC-GUa-CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 122675 | 0.66 | 0.905996 |
Target: 5'- -----aGGACCacCGGCCGCaUGCAagUGCg -3' miRNA: 3'- guugagCCUGGa-GUCGGCG-ACGU--ACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132946 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 132072 | 0.66 | 0.905996 |
Target: 5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3' miRNA: 3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 117929 | 0.66 | 0.912058 |
Target: 5'- gGGCgCGGguGCCUggcugaaccUAGCCGCUGCG-GCu -3' miRNA: 3'- gUUGaGCC--UGGA---------GUCGGCGACGUaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 109194 | 0.67 | 0.893171 |
Target: 5'- aGACcCGGGCCcuggCGGCCGCguaCcgGCg -3' miRNA: 3'- gUUGaGCCUGGa---GUCGGCGac-GuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 63640 | 0.67 | 0.879434 |
Target: 5'- gGGCU-GGGCCUgCAGCCGUgccccGCcgAUGCg -3' miRNA: 3'- gUUGAgCCUGGA-GUCGGCGa----CG--UACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 67011 | 0.67 | 0.864818 |
Target: 5'- gAGC-CuGGCUUCAGCgGCUGCGgaggGCu -3' miRNA: 3'- gUUGaGcCUGGAGUCGgCGACGUa---CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 36546 | 0.67 | 0.879434 |
Target: 5'- gGGCaUGGACCUCuAGCauCUGCuAUGCg -3' miRNA: 3'- gUUGaGCCUGGAG-UCGgcGACG-UACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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