miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 3' -55.8 NC_007605.1 + 160544 0.74 0.520741
Target:  5'- cCAGCUCcagGGACa--GGgCGCUGCAUGCa -3'
miRNA:   3'- -GUUGAG---CCUGgagUCgGCGACGUACG- -5'
33417 3' -55.8 NC_007605.1 + 124944 0.67 0.885727
Target:  5'- aAGCUauGAaacaaccCCUCAGCCGCUGacUGCc -3'
miRNA:   3'- gUUGAgcCU-------GGAGUCGGCGACguACG- -5'
33417 3' -55.8 NC_007605.1 + 63640 0.67 0.879434
Target:  5'- gGGCU-GGGCCUgCAGCCGUgccccGCcgAUGCg -3'
miRNA:   3'- gUUGAgCCUGGA-GUCGGCGa----CG--UACG- -5'
33417 3' -55.8 NC_007605.1 + 36546 0.67 0.879434
Target:  5'- gGGCaUGGACCUCuAGCauCUGCuAUGCg -3'
miRNA:   3'- gUUGaGCCUGGAG-UCGgcGACG-UACG- -5'
33417 3' -55.8 NC_007605.1 + 60020 0.67 0.864818
Target:  5'- gGACUauGGCCUCGGCaCGCUcgGCGUcgaugGCg -3'
miRNA:   3'- gUUGAgcCUGGAGUCG-GCGA--CGUA-----CG- -5'
33417 3' -55.8 NC_007605.1 + 159560 0.68 0.857193
Target:  5'- --cCUCGG-CC-CAaCCGCUGCAUGg -3'
miRNA:   3'- guuGAGCCuGGaGUcGGCGACGUACg -5'
33417 3' -55.8 NC_007605.1 + 115454 0.68 0.857193
Target:  5'- -uGCUC-GACCUgGGCCGCggccaccgGCAuaUGCu -3'
miRNA:   3'- guUGAGcCUGGAgUCGGCGa-------CGU--ACG- -5'
33417 3' -55.8 NC_007605.1 + 163746 0.69 0.807417
Target:  5'- cCGGCUUGGAgcuuucCCUCGGUagggCGCUGUagGCg -3'
miRNA:   3'- -GUUGAGCCU------GGAGUCG----GCGACGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 122316 0.72 0.631622
Target:  5'- gGAUUCGGGgC-CAGCUGCUGCGUa- -3'
miRNA:   3'- gUUGAGCCUgGaGUCGGCGACGUAcg -5'
33417 3' -55.8 NC_007605.1 + 58363 0.73 0.580645
Target:  5'- aAGCUCGGGCCccaccaggUCaaAGCCGCUGCcguugGCc -3'
miRNA:   3'- gUUGAGCCUGG--------AG--UCGGCGACGua---CG- -5'
33417 3' -55.8 NC_007605.1 + 54040 0.74 0.540479
Target:  5'- cCAGCgccCGGACCUCGGCCGCcucgGCcucgGUc -3'
miRNA:   3'- -GUUGa--GCCUGGAGUCGGCGa---CGua--CG- -5'
33417 3' -55.8 NC_007605.1 + 28791 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28689 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28587 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 71381 0.68 0.816156
Target:  5'- gAGCUUGGugCUguGCCcCUGCccggGCg -3'
miRNA:   3'- gUUGAGCCugGAguCGGcGACGua--CG- -5'
33417 3' -55.8 NC_007605.1 + 11123 0.69 0.798519
Target:  5'- gAACUCGagagaGGCCUCuGCCGC-GC-UGCu -3'
miRNA:   3'- gUUGAGC-----CUGGAGuCGGCGaCGuACG- -5'
33417 3' -55.8 NC_007605.1 + 97319 0.69 0.789471
Target:  5'- gCGGCU--GACCUCacagAGCCGCUGCG-GCc -3'
miRNA:   3'- -GUUGAgcCUGGAG----UCGGCGACGUaCG- -5'
33417 3' -55.8 NC_007605.1 + 116876 0.72 0.621395
Target:  5'- aCAAUaCGGA-CUCAGCCGCgGCA-GCa -3'
miRNA:   3'- -GUUGaGCCUgGAGUCGGCGaCGUaCG- -5'
33417 3' -55.8 NC_007605.1 + 76488 0.74 0.540479
Target:  5'- -uGCUUGGACCUggaGGCCGCUGgGgaaGCg -3'
miRNA:   3'- guUGAGCCUGGAg--UCGGCGACgUa--CG- -5'
33417 3' -55.8 NC_007605.1 + 117483 0.66 0.922923
Target:  5'- gGACUCGGcgcucugGCCUaagaagcccCAGCUGCUGaCAagGCg -3'
miRNA:   3'- gUUGAGCC-------UGGA---------GUCGGCGAC-GUa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.