miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 3' -55.8 NC_007605.1 + 8117 1.12 0.001863
Target:  5'- aCAACUCGGACCUCAGCCGCUGCAUGCa -3'
miRNA:   3'- -GUUGAGCCUGGAGUCGGCGACGUACG- -5'
33417 3' -55.8 NC_007605.1 + 8298 0.68 0.840527
Target:  5'- gGACUCGGgaGCCUuaaugauuguggaCAG-CGCgGCAUGCg -3'
miRNA:   3'- gUUGAGCC--UGGA-------------GUCgGCGaCGUACG- -5'
33417 3' -55.8 NC_007605.1 + 10783 0.68 0.824728
Target:  5'- -cGCgUCGcaGGCCUCGGCCggGCUGC-UGCu -3'
miRNA:   3'- guUG-AGC--CUGGAGUCGG--CGACGuACG- -5'
33417 3' -55.8 NC_007605.1 + 11123 0.69 0.798519
Target:  5'- gAACUCGagagaGGCCUCuGCCGC-GC-UGCu -3'
miRNA:   3'- gUUGAGC-----CUGGAGuCGGCGaCGuACG- -5'
33417 3' -55.8 NC_007605.1 + 28587 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28689 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28791 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28893 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28994 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29096 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29198 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29300 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29402 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29504 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29606 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29708 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29810 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29912 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 30013 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 30115 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.