Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33417 | 3' | -55.8 | NC_007605.1 | + | 8117 | 1.12 | 0.001863 |
Target: 5'- aCAACUCGGACCUCAGCCGCUGCAUGCa -3' miRNA: 3'- -GUUGAGCCUGGAGUCGGCGACGUACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 160544 | 0.74 | 0.520741 |
Target: 5'- cCAGCUCcagGGACa--GGgCGCUGCAUGCa -3' miRNA: 3'- -GUUGAG---CCUGgagUCgGCGACGUACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 54040 | 0.74 | 0.540479 |
Target: 5'- cCAGCgccCGGACCUCGGCCGCcucgGCcucgGUc -3' miRNA: 3'- -GUUGa--GCCUGGAGUCGGCGa---CGua--CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 76488 | 0.74 | 0.540479 |
Target: 5'- -uGCUUGGACCUggaGGCCGCUGgGgaaGCg -3' miRNA: 3'- guUGAGCCUGGAg--UCGGCGACgUa--CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 58363 | 0.73 | 0.580645 |
Target: 5'- aAGCUCGGGCCccaccaggUCaaAGCCGCUGCcguugGCc -3' miRNA: 3'- gUUGAGCCUGG--------AG--UCGGCGACGua---CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 116876 | 0.72 | 0.621395 |
Target: 5'- aCAAUaCGGA-CUCAGCCGCgGCA-GCa -3' miRNA: 3'- -GUUGaGCCUgGAGUCGGCGaCGUaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 122316 | 0.72 | 0.631622 |
Target: 5'- gGAUUCGGGgC-CAGCUGCUGCGUa- -3' miRNA: 3'- gUUGAGCCUgGaGUCGGCGACGUAcg -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 97319 | 0.69 | 0.789471 |
Target: 5'- gCGGCU--GACCUCacagAGCCGCUGCG-GCc -3' miRNA: 3'- -GUUGAgcCUGGAG----UCGGCGACGUaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 11123 | 0.69 | 0.798519 |
Target: 5'- gAACUCGagagaGGCCUCuGCCGC-GC-UGCu -3' miRNA: 3'- gUUGAGC-----CUGGAGuCGGCGaCGuACG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 163746 | 0.69 | 0.807417 |
Target: 5'- cCGGCUUGGAgcuuucCCUCGGUagggCGCUGUagGCg -3' miRNA: 3'- -GUUGAGCCU------GGAGUCG----GCGACGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 28689 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 28791 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 71381 | 0.68 | 0.816156 |
Target: 5'- gAGCUUGGugCUguGCCcCUGCccggGCg -3' miRNA: 3'- gUUGAGCCugGAguCGGcGACGua--CG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 28587 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 28994 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 29198 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 29096 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 29300 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 29402 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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33417 | 3' | -55.8 | NC_007605.1 | + | 28893 | 0.68 | 0.816156 |
Target: 5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3' miRNA: 3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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