miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 5' -61.5 NC_007605.1 + 158147 0.66 0.693406
Target:  5'- ---aGCuCCGucuGGCUGGCGUAgcGGCGCa -3'
miRNA:   3'- gacaUGuGGC---CCGACCGCGU--CCGCGa -5'
33417 5' -61.5 NC_007605.1 + 91844 0.66 0.683647
Target:  5'- uUGgGCACCGGGCUucaGGgGCAuGGUcggGCUc -3'
miRNA:   3'- gACaUGUGGCCCGA---CCgCGU-CCG---CGA- -5'
33417 5' -61.5 NC_007605.1 + 63372 0.66 0.673848
Target:  5'- gCUGUGgACUGGGgugcgGGUGCGGGUGa- -3'
miRNA:   3'- -GACAUgUGGCCCga---CCGCGUCCGCga -5'
33417 5' -61.5 NC_007605.1 + 159639 0.66 0.673848
Target:  5'- -gGUGCGCCGugaaGGCggcGGCGCAGuccgccuucaGCGCc -3'
miRNA:   3'- gaCAUGUGGC----CCGa--CCGCGUC----------CGCGa -5'
33417 5' -61.5 NC_007605.1 + 17453 0.66 0.664017
Target:  5'- uCUGUugACCuccuGGCUGGC-CAaGCGCa -3'
miRNA:   3'- -GACAugUGGc---CCGACCGcGUcCGCGa -5'
33417 5' -61.5 NC_007605.1 + 96307 0.66 0.654163
Target:  5'- aUGggugAUAgUGGGCUGaGCG-AGGCGCUc -3'
miRNA:   3'- gACa---UGUgGCCCGAC-CGCgUCCGCGA- -5'
33417 5' -61.5 NC_007605.1 + 39135 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39260 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39385 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39510 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39635 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39010 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38886 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38761 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 122870 0.67 0.634412
Target:  5'- -aGUACACaCGGccGCUGGCaugGCAGGUcaGCa -3'
miRNA:   3'- gaCAUGUG-GCC--CGACCG---CGUCCG--CGa -5'
33417 5' -61.5 NC_007605.1 + 38511 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38386 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38261 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 77611 0.67 0.634412
Target:  5'- -gGUGC-CUGGGCggGGUGCuGGCGa- -3'
miRNA:   3'- gaCAUGuGGCCCGa-CCGCGuCCGCga -5'
33417 5' -61.5 NC_007605.1 + 58760 0.67 0.634412
Target:  5'- ---aAgAUUGGGUggUGGCaGCAGGCGCUg -3'
miRNA:   3'- gacaUgUGGCCCG--ACCG-CGUCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.