miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 25276 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 16069 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 150121 0.66 0.655455
Target:  5'- cGAGcGCCgGgACgCUAguGCUGCauGGGCUCCu -3'
miRNA:   3'- -CUC-CGGgC-UGgGGU--UGACG--CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 22207 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 13000 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 158181 0.66 0.636002
Target:  5'- -uGGCCaGGCCCCcg--GUGGGCUUUa -3'
miRNA:   3'- cuCCGGgCUGGGGuugaCGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 92349 0.66 0.636002
Target:  5'- uAGGCCCG-CaCCCGACUGUguuuuaGGaGCUUg -3'
miRNA:   3'- cUCCGGGCuG-GGGUUGACG------CC-CGAGg -5'
33419 5' -62.4 NC_007605.1 + 40100 0.66 0.665159
Target:  5'- -cGGUCCGcugGCCCCAccCUGgGGGUagCCg -3'
miRNA:   3'- cuCCGGGC---UGGGGUu-GACgCCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 48770 0.66 0.645733
Target:  5'- -cGGCCgUGuguacuGCUCCAACUGCG-GCUCUg -3'
miRNA:   3'- cuCCGG-GC------UGGGGUUGACGCcCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 119355 0.66 0.684489
Target:  5'- -cGGCCCGcGCCCgAGcCUGCaugcuGCUCCu -3'
miRNA:   3'- cuCCGGGC-UGGGgUU-GACGcc---CGAGG- -5'
33419 5' -62.4 NC_007605.1 + 114210 0.66 0.655455
Target:  5'- cGGGCCUGGCCaCggUgGCuaGGGUUCCa -3'
miRNA:   3'- cUCCGGGCUGGgGuuGaCG--CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 39945 0.66 0.635028
Target:  5'- -uGGCCCGguacGCCuggauugCCGGCUGgGGGCUg- -3'
miRNA:   3'- cuCCGGGC----UGG-------GGUUGACgCCCGAgg -5'
33419 5' -62.4 NC_007605.1 + 4280 0.66 0.655455
Target:  5'- -uGGCCaCGACCCCA----CGGGCaCCc -3'
miRNA:   3'- cuCCGG-GCUGGGGUugacGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 159493 0.66 0.655455
Target:  5'- cGGGCCgGgcucucguGCCCCAGCcgGCcggggcaccuccGGGCUCUc -3'
miRNA:   3'- cUCCGGgC--------UGGGGUUGa-CG------------CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 110682 0.66 0.645733
Target:  5'- uGAGGCCCugaaaGCCCCGcACcagGGGCUCa -3'
miRNA:   3'- -CUCCGGGc----UGGGGU-UGacgCCCGAGg -5'
33419 5' -62.4 NC_007605.1 + 34483 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 152779 0.66 0.655455
Target:  5'- aGAGGCuuGggggggucuuuGCCCuCAAg-GCGaGGCUCCu -3'
miRNA:   3'- -CUCCGggC-----------UGGG-GUUgaCGC-CCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 28345 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 19138 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 31414 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.