miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 4280 0.66 0.655455
Target:  5'- -uGGCCaCGACCCCA----CGGGCaCCc -3'
miRNA:   3'- cuCCGG-GCUGGGGUugacGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 7719 1.1 0.000756
Target:  5'- gGAGGCCCGACCCCAACUGCGGGCUCCu -3'
miRNA:   3'- -CUCCGGGCUGGGGUUGACGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 8873 0.66 0.665159
Target:  5'- aGGGCCgGGCCCCGGCcGUGuGC-CUg -3'
miRNA:   3'- cUCCGGgCUGGGGUUGaCGCcCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 10568 0.69 0.475074
Target:  5'- cAGGCCCGGgCCCAGgccUUGCaGGGCa-- -3'
miRNA:   3'- cUCCGGGCUgGGGUU---GACG-CCCGagg -5'
33419 5' -62.4 NC_007605.1 + 12942 0.67 0.577787
Target:  5'- cGGGGCCCaGGCCCCAGaguccagagGUcaGGGCaCCu -3'
miRNA:   3'- -CUCCGGG-CUGGGGUUga-------CG--CCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 13000 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 13039 0.67 0.606818
Target:  5'- aGAGGCCgGuuccucGCCCCuuCccCGGGCUUCa -3'
miRNA:   3'- -CUCCGGgC------UGGGGuuGacGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 16010 0.67 0.616538
Target:  5'- cGGGGCCCaGGCCCCAGaguccagagGUcagGGGCaCCu -3'
miRNA:   3'- -CUCCGGG-CUGGGGUUga-------CG---CCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 16069 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 16108 0.67 0.606818
Target:  5'- aGAGGCCgGuuccucGCCCCuuCccCGGGCUUCa -3'
miRNA:   3'- -CUCCGGgC------UGGGGuuGacGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 16755 0.73 0.276691
Target:  5'- cGAGGUCaggCGACCCCAugaUGCGGGCa-- -3'
miRNA:   3'- -CUCCGG---GCUGGGGUug-ACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 17684 0.69 0.475074
Target:  5'- gGAGGCCCugaGCCCCGccaacCUGCaGGC-CCu -3'
miRNA:   3'- -CUCCGGGc--UGGGGUu----GACGcCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 19079 0.67 0.616538
Target:  5'- cGGGGCCCaGGCCCCAGaguccagagGUcagGGGCaCCu -3'
miRNA:   3'- -CUCCGGG-CUGGGGUUga-------CG---CCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 19138 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 19177 0.67 0.606818
Target:  5'- aGAGGCCgGuuccucGCCCCuuCccCGGGCUUCa -3'
miRNA:   3'- -CUCCGGgC------UGGGGuuGacGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 20241 0.74 0.240911
Target:  5'- cGAGGCCCuGGCCguggCCAgguacggGCUgGUGGGCUCCc -3'
miRNA:   3'- -CUCCGGG-CUGG----GGU-------UGA-CGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 20624 0.67 0.616538
Target:  5'- cGGGCCCGcCCCCcgugGCGuGGUaCCg -3'
miRNA:   3'- cUCCGGGCuGGGGuugaCGC-CCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 22148 0.67 0.616538
Target:  5'- cGGGGCCCaGGCCCCAGaguccagagGUcagGGGCaCCu -3'
miRNA:   3'- -CUCCGGG-CUGGGGUUga-------CG---CCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 22207 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 22246 0.67 0.606818
Target:  5'- aGAGGCCgGuuccucGCCCCuuCccCGGGCUUCa -3'
miRNA:   3'- -CUCCGGgC------UGGGGuuGacGCCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.