miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 7719 1.1 0.000756
Target:  5'- gGAGGCCCGACCCCAACUGCGGGCUCCu -3'
miRNA:   3'- -CUCCGGGCUGGGGUUGACGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 79883 0.79 0.126522
Target:  5'- aGAGGCCagggccgaGGCCCCGcgcCUGCGGGCcCCa -3'
miRNA:   3'- -CUCCGGg-------CUGGGGUu--GACGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 20241 0.74 0.240911
Target:  5'- cGAGGCCCuGGCCguggCCAgguacggGCUgGUGGGCUCCc -3'
miRNA:   3'- -CUCCGGG-CUGG----GGU-------UGA-CGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 98168 0.74 0.252773
Target:  5'- uGGGacCCCGACCCCGAUgacggacucaUGCGGGCcugggCCg -3'
miRNA:   3'- cUCC--GGGCUGGGGUUG----------ACGCCCGa----GG- -5'
33419 5' -62.4 NC_007605.1 + 107161 0.74 0.258588
Target:  5'- -cGGCCUGGCCC--GCUGCaGGGCUgCCc -3'
miRNA:   3'- cuCCGGGCUGGGguUGACG-CCCGA-GG- -5'
33419 5' -62.4 NC_007605.1 + 170641 0.73 0.270547
Target:  5'- cGGGGUCCGcggGCUCCGggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU--UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 16755 0.73 0.276691
Target:  5'- cGAGGUCaggCGACCCCAugaUGCGGGCa-- -3'
miRNA:   3'- -CUCCGG---GCUGGGGUug-ACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 170118 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 169581 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 171178 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 124526 0.73 0.300393
Target:  5'- uGAGGCCCcucuccagggcaucGACCCCaAACUGUaGGGCcgaggCCa -3'
miRNA:   3'- -CUCCGGG--------------CUGGGG-UUGACG-CCCGa----GG- -5'
33419 5' -62.4 NC_007605.1 + 170403 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 169865 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 171463 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 170925 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 110374 0.72 0.309085
Target:  5'- cAGGcCCCGGCCCCGGCUcCGGccCUCCc -3'
miRNA:   3'- cUCC-GGGCUGGGGUUGAcGCCc-GAGG- -5'
33419 5' -62.4 NC_007605.1 + 169289 0.72 0.315901
Target:  5'- gGAGGUCCGGCCUCGugUcaGCGGuCUCUg -3'
miRNA:   3'- -CUCCGGGCUGGGGUugA--CGCCcGAGG- -5'
33419 5' -62.4 NC_007605.1 + 28145 0.72 0.329871
Target:  5'- uGAGGCuCCGccuACCCCAAauCUcGCGGGcCUCUa -3'
miRNA:   3'- -CUCCG-GGC---UGGGGUU--GA-CGCCC-GAGG- -5'
33419 5' -62.4 NC_007605.1 + 72451 0.72 0.337025
Target:  5'- uGAGGCCCGuCCCCuGACcggcGCGGGagCCg -3'
miRNA:   3'- -CUCCGGGCuGGGG-UUGa---CGCCCgaGG- -5'
33419 5' -62.4 NC_007605.1 + 137214 0.71 0.359161
Target:  5'- uGGGGCCUgGGCCCCGAggGUG-GCUCCc -3'
miRNA:   3'- -CUCCGGG-CUGGGGUUgaCGCcCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.