miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 115358 0.68 0.511519
Target:  5'- aGGGCCgGACuCCCAGC-GUGGcccaaccucuGCUCCc -3'
miRNA:   3'- cUCCGGgCUG-GGGUUGaCGCC----------CGAGG- -5'
33419 5' -62.4 NC_007605.1 + 151129 0.7 0.431429
Target:  5'- -cGGCCCGuGCCCCAGCUccgucacgGgGGGCg-- -3'
miRNA:   3'- cuCCGGGC-UGGGGUUGA--------CgCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 74563 0.69 0.466165
Target:  5'- -uGGCCUucuaucUCCCAgacuggucguGCUGCGGGCUCUg -3'
miRNA:   3'- cuCCGGGcu----GGGGU----------UGACGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 10568 0.69 0.475074
Target:  5'- cAGGCCCGGgCCCAGgccUUGCaGGGCa-- -3'
miRNA:   3'- cUCCGGGCUgGGGUU---GACG-CCCGagg -5'
33419 5' -62.4 NC_007605.1 + 53710 0.69 0.475074
Target:  5'- cAGGCacCCGcgcCCCCAGCUaagGCcaGGGCUCCu -3'
miRNA:   3'- cUCCG--GGCu--GGGGUUGA---CG--CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 50549 0.69 0.484068
Target:  5'- --aGCCgGACCCCAGg-GCGGGUgCCu -3'
miRNA:   3'- cucCGGgCUGGGGUUgaCGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 87790 0.69 0.484068
Target:  5'- cGGGGCCUccugccgcggGGCCuCCuGCcGCGGGgCUCCu -3'
miRNA:   3'- -CUCCGGG----------CUGG-GGuUGaCGCCC-GAGG- -5'
33419 5' -62.4 NC_007605.1 + 75400 0.69 0.502294
Target:  5'- uGGGGCCaagGACCCCcgcgucACUGUGGGggCUg -3'
miRNA:   3'- -CUCCGGg--CUGGGGu-----UGACGCCCgaGG- -5'
33419 5' -62.4 NC_007605.1 + 59129 0.68 0.511519
Target:  5'- cGGGGCCgGuuCCCCGGgUGCGcuGGCUUUg -3'
miRNA:   3'- -CUCCGGgCu-GGGGUUgACGC--CCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 74530 0.7 0.431429
Target:  5'- cGGGa--GGCCCCAACgGCGGGCUa- -3'
miRNA:   3'- cUCCgggCUGGGGUUGaCGCCCGAgg -5'
33419 5' -62.4 NC_007605.1 + 62133 0.7 0.422983
Target:  5'- -cGGCCCcGCCCCcACUGU--GCUCCa -3'
miRNA:   3'- cuCCGGGcUGGGGuUGACGccCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 107088 0.71 0.39022
Target:  5'- -cGGCCUGGgUCuCGGCaGUGGGCUCCc -3'
miRNA:   3'- cuCCGGGCUgGG-GUUGaCGCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 169581 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 170118 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 171178 0.73 0.295791
Target:  5'- cGGGGUCCGcggGCUCCGgggGCUGCGGGCg-- -3'
miRNA:   3'- -CUCCGGGC---UGGGGU---UGACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 124526 0.73 0.300393
Target:  5'- uGAGGCCCcucuccagggcaucGACCCCaAACUGUaGGGCcgaggCCa -3'
miRNA:   3'- -CUCCGGG--------------CUGGGG-UUGACG-CCCGa----GG- -5'
33419 5' -62.4 NC_007605.1 + 169865 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 170403 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 170925 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 171463 0.73 0.301718
Target:  5'- aGGGCCCcagggcuGACCCCGGCaaacgUGacccgGGGCUCCg -3'
miRNA:   3'- cUCCGGG-------CUGGGGUUG-----ACg----CCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.