miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 28897 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16621 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 22759 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 25828 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 19690 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 84639 0.66 0.964534
Target:  5'- aGUACC-ACAACagcCCCGGGCUggCAGa -3'
miRNA:   3'- -CGUGGuUGUUGcuaGGGUCCGGa-GUC- -5'
33424 5' -54 NC_007605.1 + 54042 0.66 0.964534
Target:  5'- aGCGCCcgGACcuCGGccgCCUcGGCCUCGGu -3'
miRNA:   3'- -CGUGG--UUGuuGCUa--GGGuCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 134329 0.66 0.967742
Target:  5'- gGC-CCAcggugGCGGCaGAccCCCAGGCCUCc- -3'
miRNA:   3'- -CGuGGU-----UGUUG-CUa-GGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 40311 0.66 0.967742
Target:  5'- gGC-CCGGCGggggugggggguGCGcUCCCAGGCCg--- -3'
miRNA:   3'- -CGuGGUUGU------------UGCuAGGGUCCGGaguc -5'
33424 5' -54 NC_007605.1 + 13552 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 62427 0.66 0.961108
Target:  5'- uGCGCCGguacGCGGCcgccaGggCCCGGGUCUCu- -3'
miRNA:   3'- -CGUGGU----UGUUG-----CuaGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 35034 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 136476 0.66 0.967742
Target:  5'- cGCGCCuuccuACGGUCCUgGGGCCggagCGGu -3'
miRNA:   3'- -CGUGGuugu-UGCUAGGG-UCCGGa---GUC- -5'
33424 5' -54 NC_007605.1 + 65908 0.66 0.967742
Target:  5'- uCACCAACAAgGAggaggCCCuuAGGCCa--- -3'
miRNA:   3'- cGUGGUUGUUgCUa----GGG--UCCGGaguc -5'
33424 5' -54 NC_007605.1 + 19070 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 31965 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 22139 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16001 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 157684 0.66 0.97074
Target:  5'- cGCACCcGCuuUGGggcugccucUCCC-GGCCUUAGa -3'
miRNA:   3'- -CGUGGuUGuuGCU---------AGGGuCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 99035 0.66 0.970449
Target:  5'- aGCGaCGAgGAUGAagcaacccccggcUCUCAGGCCUCAc -3'
miRNA:   3'- -CGUgGUUgUUGCU-------------AGGGUCCGGAGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.