miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 1936 1.1 0.004369
Target:  5'- gGCACCAACAACGAUCCCAGGCCUCAGc -3'
miRNA:   3'- -CGUGGUUGUUGCUAGGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 50372 0.77 0.453951
Target:  5'- uCGCCAgACGGCcGUCCCGGGCCUCu- -3'
miRNA:   3'- cGUGGU-UGUUGcUAGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 159802 0.76 0.529922
Target:  5'- cGCACCAgggccagGCGACGcUCCCGGGCaaaCAGg -3'
miRNA:   3'- -CGUGGU-------UGUUGCuAGGGUCCGga-GUC- -5'
33424 5' -54 NC_007605.1 + 41155 0.75 0.581358
Target:  5'- -gACCGaacugaugGCAAaGGUCCCAGGCCUUAGc -3'
miRNA:   3'- cgUGGU--------UGUUgCUAGGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 63826 0.75 0.601839
Target:  5'- uGCGCCcgggugauGGCGugcGCGAgggCCUAGGCCUCGGc -3'
miRNA:   3'- -CGUGG--------UUGU---UGCUa--GGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 109044 0.73 0.684038
Target:  5'- uGCGCUuacgGACAucuuuaaGAUUCCAGGCCUCAu -3'
miRNA:   3'- -CGUGG----UUGUug-----CUAGGGUCCGGAGUc -5'
33424 5' -54 NC_007605.1 + 108281 0.73 0.694209
Target:  5'- cCACCGGCcaaGGUCCUGGGCCUCc- -3'
miRNA:   3'- cGUGGUUGuugCUAGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 32881 0.73 0.704327
Target:  5'- uGCACUuGCAu--AUUCCGGGCCUCAGc -3'
miRNA:   3'- -CGUGGuUGUugcUAGGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 63494 0.72 0.734274
Target:  5'- uCACC-ACggUGGUCCaCGGGCCUguGg -3'
miRNA:   3'- cGUGGuUGuuGCUAGG-GUCCGGAguC- -5'
33424 5' -54 NC_007605.1 + 127491 0.72 0.744089
Target:  5'- uGCAUCAAUA--GGUCCCAGguucauguGCCUCAGg -3'
miRNA:   3'- -CGUGGUUGUugCUAGGGUC--------CGGAGUC- -5'
33424 5' -54 NC_007605.1 + 11616 0.72 0.763412
Target:  5'- gGC-CCAGaggagggcGCGGUCCCGGGCC-CGGg -3'
miRNA:   3'- -CGuGGUUgu------UGCUAGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 47156 0.71 0.772901
Target:  5'- gGCGCCAgagucACAGguggaggaGGUCCCAGGCCUg-- -3'
miRNA:   3'- -CGUGGU-----UGUUg-------CUAGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 133736 0.71 0.791488
Target:  5'- aCACCAGCAGCGcccccUCCCu-GCCUCAc -3'
miRNA:   3'- cGUGGUUGUUGCu----AGGGucCGGAGUc -5'
33424 5' -54 NC_007605.1 + 148717 0.71 0.809493
Target:  5'- cCGCCAu--GCGAcugcucgcccccUCCCAGGCCUCc- -3'
miRNA:   3'- cGUGGUuguUGCU------------AGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 73392 0.7 0.818255
Target:  5'- cGUGCCAGCGcGCGAgcuccaccagcUCCCGGGCCa--- -3'
miRNA:   3'- -CGUGGUUGU-UGCU-----------AGGGUCCGGaguc -5'
33424 5' -54 NC_007605.1 + 7670 0.7 0.818255
Target:  5'- gGCAUCAcCGugGAg-CCGGGCUUCAGc -3'
miRNA:   3'- -CGUGGUuGUugCUagGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 67476 0.7 0.851513
Target:  5'- -gGCUcuGCAugaGGUCCCGGGCUUCGGa -3'
miRNA:   3'- cgUGGu-UGUug-CUAGGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 143711 0.69 0.86621
Target:  5'- uCGCCAACAgagacccggGCGAUCCCccuccacuuccccGGGCCUa-- -3'
miRNA:   3'- cGUGGUUGU---------UGCUAGGG-------------UCCGGAguc -5'
33424 5' -54 NC_007605.1 + 153612 0.69 0.866962
Target:  5'- cGCGCCGGCAGCGuGUCUgcacaaacuugCAGGCCgucuucCGGa -3'
miRNA:   3'- -CGUGGUUGUUGC-UAGG-----------GUCCGGa-----GUC- -5'
33424 5' -54 NC_007605.1 + 54840 0.69 0.87217
Target:  5'- cGUGCCccCAGCGccuuccuaauucuggCCCAGGCCUCAu -3'
miRNA:   3'- -CGUGGuuGUUGCua-------------GGGUCCGGAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.