miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 14089 0.67 0.945136
Target:  5'- cGCGCaUAAUGGCGGaCCUAGGCCUa-- -3'
miRNA:   3'- -CGUG-GUUGUUGCUaGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 99167 0.69 0.881556
Target:  5'- cCGCCGGCucccgcgcCGGUCaggggaCGGGCCUCAGc -3'
miRNA:   3'- cGUGGUUGuu------GCUAGg-----GUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 72311 0.68 0.901754
Target:  5'- -gACCcaGGCGACGAgaUCCAGGCC-CAGa -3'
miRNA:   3'- cgUGG--UUGUUGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 116872 0.68 0.908019
Target:  5'- gGC-CCugcCGGCGAUCCUGGGCUUUAu -3'
miRNA:   3'- -CGuGGuu-GUUGCUAGGGUCCGGAGUc -5'
33424 5' -54 NC_007605.1 + 48542 0.68 0.919831
Target:  5'- cGUGCCuGCcGCGGgucCCCGGGCCUaCAa -3'
miRNA:   3'- -CGUGGuUGuUGCUa--GGGUCCGGA-GUc -5'
33424 5' -54 NC_007605.1 + 58433 0.67 0.930678
Target:  5'- aGCAUaaagauGCGGgGGUCCUcugucucaaAGGCCUCGGg -3'
miRNA:   3'- -CGUGgu----UGUUgCUAGGG---------UCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 150772 0.67 0.930678
Target:  5'- cGCGCCAgaGCAGag--CCCGGGacugaCUCAGg -3'
miRNA:   3'- -CGUGGU--UGUUgcuaGGGUCCg----GAGUC- -5'
33424 5' -54 NC_007605.1 + 93358 0.67 0.940557
Target:  5'- cCACCAGCucuugAugGcgUCCGGGCC-CAGu -3'
miRNA:   3'- cGUGGUUG-----UugCuaGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 163007 0.67 0.940557
Target:  5'- uCGgCGGCAGgGGUCCCAGGUCcccuccugCAGg -3'
miRNA:   3'- cGUgGUUGUUgCUAGGGUCCGGa-------GUC- -5'
33424 5' -54 NC_007605.1 + 98831 0.69 0.881556
Target:  5'- aGCAgCAGCuacacucuGgGGUCUCAGGCCUCc- -3'
miRNA:   3'- -CGUgGUUGu-------UgCUAGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 54840 0.69 0.87217
Target:  5'- cGUGCCccCAGCGccuuccuaauucuggCCCAGGCCUCAu -3'
miRNA:   3'- -CGUGGuuGUUGCua-------------GGGUCCGGAGUc -5'
33424 5' -54 NC_007605.1 + 153612 0.69 0.866962
Target:  5'- cGCGCCGGCAGCGuGUCUgcacaaacuugCAGGCCgucuucCGGa -3'
miRNA:   3'- -CGUGGUUGUUGC-UAGG-----------GUCCGGa-----GUC- -5'
33424 5' -54 NC_007605.1 + 159802 0.76 0.529922
Target:  5'- cGCACCAgggccagGCGACGcUCCCGGGCaaaCAGg -3'
miRNA:   3'- -CGUGGU-------UGUUGCuAGGGUCCGga-GUC- -5'
33424 5' -54 NC_007605.1 + 109044 0.73 0.684038
Target:  5'- uGCGCUuacgGACAucuuuaaGAUUCCAGGCCUCAu -3'
miRNA:   3'- -CGUGG----UUGUug-----CUAGGGUCCGGAGUc -5'
33424 5' -54 NC_007605.1 + 108281 0.73 0.694209
Target:  5'- cCACCGGCcaaGGUCCUGGGCCUCc- -3'
miRNA:   3'- cGUGGUUGuugCUAGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 63494 0.72 0.734274
Target:  5'- uCACC-ACggUGGUCCaCGGGCCUguGg -3'
miRNA:   3'- cGUGGuUGuuGCUAGG-GUCCGGAguC- -5'
33424 5' -54 NC_007605.1 + 47156 0.71 0.772901
Target:  5'- gGCGCCAgagucACAGguggaggaGGUCCCAGGCCUg-- -3'
miRNA:   3'- -CGUGGU-----UGUUg-------CUAGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 133736 0.71 0.791488
Target:  5'- aCACCAGCAGCGcccccUCCCu-GCCUCAc -3'
miRNA:   3'- cGUGGUUGUUGCu----AGGGucCGGAGUc -5'
33424 5' -54 NC_007605.1 + 148717 0.71 0.809493
Target:  5'- cCGCCAu--GCGAcugcucgcccccUCCCAGGCCUCc- -3'
miRNA:   3'- cGUGGUuguUGCU------------AGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 73392 0.7 0.818255
Target:  5'- cGUGCCAGCGcGCGAgcuccaccagcUCCCGGGCCa--- -3'
miRNA:   3'- -CGUGGUUGU-UGCU-----------AGGGUCCGGaguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.