miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 982 0.67 0.949477
Target:  5'- cCGCCcGCAGCc--CCCGGGCCcgCGGa -3'
miRNA:   3'- cGUGGuUGUUGcuaGGGUCCGGa-GUC- -5'
33424 5' -54 NC_007605.1 + 1936 1.1 0.004369
Target:  5'- gGCACCAACAACGAUCCCAGGCCUCAGc -3'
miRNA:   3'- -CGUGGUUGUUGCUAGGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 7670 0.7 0.818255
Target:  5'- gGCAUCAcCGugGAg-CCGGGCUUCAGc -3'
miRNA:   3'- -CGUGGUuGUugCUagGGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 10549 0.67 0.953584
Target:  5'- cCGCCAagaugcgaaacuACAGgccCGggCCCAGGCCUugCAGg -3'
miRNA:   3'- cGUGGU------------UGUU---GCuaGGGUCCGGA--GUC- -5'
33424 5' -54 NC_007605.1 + 10778 0.69 0.895252
Target:  5'- aGCACC----GCG-UCgCAGGCCUCGGc -3'
miRNA:   3'- -CGUGGuuguUGCuAGgGUCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 11616 0.72 0.763412
Target:  5'- gGC-CCAGaggagggcGCGGUCCCGGGCC-CGGg -3'
miRNA:   3'- -CGuGGUUgu------UGCUAGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 12933 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 13552 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 14089 0.67 0.945136
Target:  5'- cGCGCaUAAUGGCGGaCCUAGGCCUa-- -3'
miRNA:   3'- -CGUG-GUUGUUGCUaGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 15422 0.66 0.97074
Target:  5'- gGCAgCCAGgGACcguuUUCCAGGCCUacgCAGa -3'
miRNA:   3'- -CGU-GGUUgUUGcu--AGGGUCCGGA---GUC- -5'
33424 5' -54 NC_007605.1 + 16001 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16621 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16795 0.66 0.97074
Target:  5'- cGgGCCAACAccaaGGUCCgCAucaccGGCCUCAu -3'
miRNA:   3'- -CgUGGUUGUug--CUAGG-GU-----CCGGAGUc -5'
33424 5' -54 NC_007605.1 + 17158 0.67 0.945136
Target:  5'- cGCGCaUAAUGGCGGaCCUAGGCCUa-- -3'
miRNA:   3'- -CGUG-GUUGUUGCUaGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 19070 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 19690 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 20227 0.67 0.945136
Target:  5'- cGCGCaUAAUGGCGGaCCUAGGCCUa-- -3'
miRNA:   3'- -CGUG-GUUGUUGCUaGGGUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 22139 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 22567 0.66 0.961108
Target:  5'- -gGCCAgaGCAugG--CCCAGGCCUUu- -3'
miRNA:   3'- cgUGGU--UGUugCuaGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 22759 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.