miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 79885 0.75 0.164373
Target:  5'- aGGCCagGGCCGAGGCCccGCGcCuGCGGg -3'
miRNA:   3'- gUCGGg-CCGGCUCCGGa-CGCuG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 83812 0.68 0.445982
Target:  5'- aGGCCCcgcGGCagGAGGCCcGCGGCaggaggccccGCGGc -3'
miRNA:   3'- gUCGGG---CCGg-CUCCGGaCGCUG----------CGCC- -5'
33616 3' -64.8 NC_007605.1 + 115864 0.68 0.471776
Target:  5'- gGGCCUGGCCGGuguGGCCUcgGCcccaGGCGCc- -3'
miRNA:   3'- gUCGGGCCGGCU---CCGGA--CG----CUGCGcc -5'
33616 3' -64.8 NC_007605.1 + 109602 0.66 0.591727
Target:  5'- uGGCCCGGCgGcGGGCgguagagauccuggGCGuguACGCGGa -3'
miRNA:   3'- gUCGGGCCGgC-UCCGga------------CGC---UGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 70882 0.72 0.265983
Target:  5'- -uGCCgGGCaGGGGCgUGCcGCGCGGg -3'
miRNA:   3'- guCGGgCCGgCUCCGgACGcUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 20792 0.71 0.296678
Target:  5'- gGGCCCaugaaGGCCcgGGGGCUgGCGAgGCGGc -3'
miRNA:   3'- gUCGGG-----CCGG--CUCCGGaCGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 228 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 766 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 6913 0.69 0.396869
Target:  5'- --cCCCGGUCGAGGCgUGgGuCGCGc -3'
miRNA:   3'- gucGGGCCGGCUCCGgACgCuGCGCc -5'
33616 3' -64.8 NC_007605.1 + 72436 0.68 0.445982
Target:  5'- uGGCCUGggagguGCUGAGGCCcGUccccugaccGGCGCGGg -3'
miRNA:   3'- gUCGGGC------CGGCUCCGGaCG---------CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 131233 0.69 0.403215
Target:  5'- cCGGCCCGGCguccuugCGGcGGCCUccccccccaugaaGCGggugGCGCGGg -3'
miRNA:   3'- -GUCGGGCCG-------GCU-CCGGA-------------CGC----UGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 1826 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 103935 0.75 0.164373
Target:  5'- uUAGCCCGGCCGu-GCCUGCGuuggccACgGCGGc -3'
miRNA:   3'- -GUCGGGCCGGCucCGGACGC------UG-CGCC- -5'
33616 3' -64.8 NC_007605.1 + 112927 0.69 0.412853
Target:  5'- uCAGuCCCuGGCCGAGGuCCUGC-ACGgcaguuacaaCGGg -3'
miRNA:   3'- -GUC-GGG-CCGGCUCC-GGACGcUGC----------GCC- -5'
33616 3' -64.8 NC_007605.1 + 167622 0.73 0.237374
Target:  5'- aUAGCCuccaucaCGGCCGAGuuGUCUGCccGGCGCGGa -3'
miRNA:   3'- -GUCGG-------GCCGGCUC--CGGACG--CUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 1288 0.69 0.396869
Target:  5'- gGGCuuGGCUGGcgcGGCCgGgGGCGCGa -3'
miRNA:   3'- gUCGggCCGGCU---CCGGaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 117584 0.69 0.412853
Target:  5'- aGGCCgaggCGGCCGAGGUCcG-GGCGCuGGa -3'
miRNA:   3'- gUCGG----GCCGGCUCCGGaCgCUGCG-CC- -5'
33616 3' -64.8 NC_007605.1 + 110114 0.68 0.454493
Target:  5'- uGGCCCGGgCGGccuaCCUGCGG-GCGGa -3'
miRNA:   3'- gUCGGGCCgGCUcc--GGACGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 11835 0.72 0.243319
Target:  5'- -cGCCUGGCCcuggugcggGGGGCCUGCGAggaggcgcugGCGGg -3'
miRNA:   3'- guCGGGCCGG---------CUCCGGACGCUg---------CGCC- -5'
33616 3' -64.8 NC_007605.1 + 108580 0.69 0.376694
Target:  5'- gCAGCCCugcgcgccagacGGCCgccgcacucagcgagGAGGCCUGCG-CGUGu -3'
miRNA:   3'- -GUCGGG------------CCGG---------------CUCCGGACGCuGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.