miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 56272 0.8 0.515625
Target:  5'- gGGCCACGCUGG--GAGUccggcccuuUG-CCUGGGg -3'
miRNA:   3'- -CCGGUGCGACUauUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 146340 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 152478 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 37971 0.66 0.997424
Target:  5'- aGGUCugGCaGGUGccugacgucuGAGaaaaaGUCCUGGGu -3'
miRNA:   3'- -CCGGugCGaCUAU----------UUCaa---CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 71446 0.69 0.977181
Target:  5'- gGGCgAacugcCGCUGG--AGGUUG-CCUGGGa -3'
miRNA:   3'- -CCGgU-----GCGACUauUUCAACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 117593 0.69 0.979541
Target:  5'- cGGCCgagguccggGCGCUGGaAGAGcagGUCC-GGGa -3'
miRNA:   3'- -CCGG---------UGCGACUaUUUCaa-CAGGaCCC- -5'
33616 5' -50.6 NC_007605.1 + 42090 0.67 0.99233
Target:  5'- cGCCAUGCUGAUGGccacggucaagauGGagGagCUGGGu -3'
miRNA:   3'- cCGGUGCGACUAUU-------------UCaaCagGACCC- -5'
33616 5' -50.6 NC_007605.1 + 35290 0.67 0.994318
Target:  5'- gGGggACGCUGAUGAg---GUCCUGGc -3'
miRNA:   3'- -CCggUGCGACUAUUucaaCAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 101055 0.66 0.995671
Target:  5'- cGCCAacUGCagacggagacacGAUGAAGUUGaauUCCUGGGc -3'
miRNA:   3'- cCGGU--GCGa-----------CUAUUUCAAC---AGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 143271 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 37270 0.66 0.996059
Target:  5'- aGCCcggggaaaagagaGCUGAUGGAGg---CCUGGGg -3'
miRNA:   3'- cCGGug-----------CGACUAUUUCaacaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38204 0.66 0.99518
Target:  5'- aGCCAgGCUGccggccaccaucagAGGGggGUCCgUGGGa -3'
miRNA:   3'- cCGGUgCGACua------------UUUCaaCAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 64335 0.74 0.817895
Target:  5'- aGGUguC-CUGGggaaUAGAGUUGUCCUGGGc -3'
miRNA:   3'- -CCGguGcGACU----AUUUCAACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 137133 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 27603 0.72 0.920926
Target:  5'- -aCCACGCUGG-AGGGacaUUGUCCaUGGGa -3'
miRNA:   3'- ccGGUGCGACUaUUUC---AACAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 130419 0.67 0.994318
Target:  5'- -aCCACGCUGG-AGGGacaUUGUCCacGGGa -3'
miRNA:   3'- ccGGUGCGACUaUUUC---AACAGGa-CCC- -5'
33616 5' -50.6 NC_007605.1 + 140202 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 149409 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 108057 0.7 0.958683
Target:  5'- aGCCACGCguccaGAUccacAAAGgccUCCUGGGg -3'
miRNA:   3'- cCGGUGCGa----CUA----UUUCaacAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 16221 0.67 0.990845
Target:  5'- uGCCACGCgccgcu--UUGUCCUGGa -3'
miRNA:   3'- cCGGUGCGacuauuucAACAGGACCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.