miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33617 5' -56.3 NC_007605.1 + 158525 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 137042 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 155456 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 140111 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 143180 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 149318 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 146249 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 152387 0.66 0.897466
Target:  5'- cCUGGAGGgGAggagaggGGaCGCCuAGGGUc- -3'
miRNA:   3'- cGACCUCCgUUa------CCaGCGG-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 140632 0.66 0.897466
Target:  5'- aGCUcGGGGGCGGccgGGUgGCCcaccGGGUc- -3'
miRNA:   3'- -CGA-CCUCCGUUa--CCAgCGGu---CCCAaa -5'
33617 5' -56.3 NC_007605.1 + 78179 0.66 0.897466
Target:  5'- gGCUGGuGGCAuuuggGGUugggguagucacUGCUGGGGUg- -3'
miRNA:   3'- -CGACCuCCGUua---CCA------------GCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 78137 0.66 0.897466
Target:  5'- gGCUGGuGGCAuuuggGGUugggguagucacUGCUGGGGUg- -3'
miRNA:   3'- -CGACCuCCGUua---CCA------------GCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 48438 0.66 0.895497
Target:  5'- gGC-GGGGGCGuaggggaggagcucGUGGggGCCGGGGg-- -3'
miRNA:   3'- -CGaCCUCCGU--------------UACCagCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 63606 0.66 0.883945
Target:  5'- cGCcgggGGuGGCGGUGGaguaugcuUCGUCGGGGg-- -3'
miRNA:   3'- -CGa---CCuCCGUUACC--------AGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 18671 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 15602 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 12533 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 27878 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 34015 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 30946 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 96519 0.66 0.869522
Target:  5'- aGCaGGAGGgGcaggagcaggagGUGGagGCCGGGGUc- -3'
miRNA:   3'- -CGaCCUCCgU------------UACCagCGGUCCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.