miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 167669 0.67 0.914977
Target:  5'- uCCGUCUgucauCAAAGGcGGGCCcuGGUCAc- -3'
miRNA:   3'- -GGCAGGu----GUUUCU-CCCGGu-CCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 164333 0.75 0.518558
Target:  5'- -aGUCUGCGAuAGAGGGCCAGGUaguGGGc -3'
miRNA:   3'- ggCAGGUGUU-UCUCCCGGUCCAg--UCU- -5'
33618 5' -55.1 NC_007605.1 + 163150 0.66 0.949746
Target:  5'- gCGUggaCACGuGGGGGGCCAGG-CuGGc -3'
miRNA:   3'- gGCAg--GUGUuUCUCCCGGUCCaGuCU- -5'
33618 5' -55.1 NC_007605.1 + 161730 1.11 0.003074
Target:  5'- cCCGUCCACAAAGAGGGCCAGGUCAGAg -3'
miRNA:   3'- -GGCAGGUGUUUCUCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 158860 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 155791 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 153919 0.85 0.147831
Target:  5'- gCGUCCGgGGAGGGGGCCAGGgccugCAGGu -3'
miRNA:   3'- gGCAGGUgUUUCUCCCGGUCCa----GUCU- -5'
33618 5' -55.1 NC_007605.1 + 152722 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 149654 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 146585 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 143516 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 143212 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 140447 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 137378 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 133108 0.71 0.729019
Target:  5'- cUCGagCugGCAGAGcgggaggccgaaAGGGCCAGGUCGGAg -3'
miRNA:   3'- -GGCagG--UGUUUC------------UCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 132217 0.68 0.883147
Target:  5'- gUCGgagCCAuCAAGGGGGGCCAgugGGUgGGc -3'
miRNA:   3'- -GGCa--GGU-GUUUCUCCCGGU---CCAgUCu -5'
33618 5' -55.1 NC_007605.1 + 131621 0.73 0.648942
Target:  5'- aCGcCCugGGGGAGGGaaCCGGGUgGGAg -3'
miRNA:   3'- gGCaGGugUUUCUCCC--GGUCCAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 130436 0.7 0.794901
Target:  5'- uUGUCCACGggacAAGGcacaGGCCAGGUCAuGAc -3'
miRNA:   3'- gGCAGGUGU----UUCUc---CCGGUCCAGU-CU- -5'
33618 5' -55.1 NC_007605.1 + 126046 0.73 0.648942
Target:  5'- gCgGUCCAgaagcCAGGGAGGGCagacggauguCAGGUCGGGc -3'
miRNA:   3'- -GgCAGGU-----GUUUCUCCCG----------GUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 119437 0.7 0.803804
Target:  5'- gCGcCCGCu-GGAGGGCCcGGUCGc- -3'
miRNA:   3'- gGCaGGUGuuUCUCCCGGuCCAGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.