miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33620 3' -62.8 NC_007605.1 + 25088 0.66 0.675325
Target:  5'- uGUUGCCC-UCUCCucuaauuGCACCGGccaGUCAg -3'
miRNA:   3'- -CGACGGGcAGAGGc------CGUGGCCc--CAGU- -5'
33620 3' -62.8 NC_007605.1 + 58569 0.66 0.675325
Target:  5'- gGgUGCCCGgggccgcauccUUCUGGCAgUgGGGGUCAa -3'
miRNA:   3'- -CgACGGGCa----------GAGGCCGU-GgCCCCAGU- -5'
33620 3' -62.8 NC_007605.1 + 38617 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 38367 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39616 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39491 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39241 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 38991 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 38742 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 3792 0.66 0.665717
Target:  5'- aGCUGCuuGUCUCCG-CAaaacCCGGcGGa-- -3'
miRNA:   3'- -CGACGggCAGAGGCcGU----GGCC-CCagu -5'
33620 3' -62.8 NC_007605.1 + 168945 0.66 0.665717
Target:  5'- cGCcGCCCuGgcaucugCUCCGGgGCCGGuggcGGUCu -3'
miRNA:   3'- -CGaCGGG-Ca------GAGGCCgUGGCC----CCAGu -5'
33620 3' -62.8 NC_007605.1 + 39366 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 38867 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39741 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 39116 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 38492 0.66 0.665717
Target:  5'- cGCUGCgCCGcCgCCagguccuggGGCAgCCGGGGUUc -3'
miRNA:   3'- -CGACG-GGCaGaGG---------CCGU-GGCCCCAGu -5'
33620 3' -62.8 NC_007605.1 + 16273 0.66 0.66283
Target:  5'- aGCUGCCgccgcgccauccccCGcCUCCaGCACCGGGacUCGu -3'
miRNA:   3'- -CGACGG--------------GCaGAGGcCGUGGCCCc-AGU- -5'
33620 3' -62.8 NC_007605.1 + 108892 0.66 0.659941
Target:  5'- cGCUGCCCGcCUgCGcGCgcugaugccucuggaGCUGGGGaUCu -3'
miRNA:   3'- -CGACGGGCaGAgGC-CG---------------UGGCCCC-AGu -5'
33620 3' -62.8 NC_007605.1 + 76993 0.66 0.656086
Target:  5'- -gUGCCCG-CUCCcGCucCCGGGGa-- -3'
miRNA:   3'- cgACGGGCaGAGGcCGu-GGCCCCagu -5'
33620 3' -62.8 NC_007605.1 + 167447 0.66 0.656086
Target:  5'- aCUGCCCGUCUUCugaaGCACUGGcGUg- -3'
miRNA:   3'- cGACGGGCAGAGGc---CGUGGCCcCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.